Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3145 and GFF3146 are separated by 43 nucleotides GFF3146 and GFF3147 are separated by 126 nucleotides GFF3147 and GFF3148 overlap by 4 nucleotides
GFF3145 - Two-component system response regulator QseB, at 579,221 to 579,847
GFF3145
GFF3146 - no description, at 579,891 to 580,481
GFF3146
GFF3147 - hypothetical protein, at 580,608 to 581,993
GFF3147
GFF3148 - no description, at 581,990 to 583,102
GFF3148
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 579.866 kb on + strand at 579.866 kb on + strand at 579.938 kb on - strand at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.210 kb on + strand, within GFF3146 at 580.211 kb on - strand, within GFF3146 at 580.464 kb on + strand at 580.513 kb on - strand at 580.513 kb on - strand at 580.513 kb on - strand at 580.523 kb on + strand at 580.523 kb on + strand at 580.523 kb on + strand at 580.524 kb on - strand at 580.524 kb on - strand at 580.558 kb on - strand at 580.699 kb on - strand at 580.699 kb on - strand at 581.016 kb on + strand, within GFF3147 at 581.016 kb on + strand, within GFF3147 at 581.017 kb on - strand, within GFF3147 at 581.211 kb on + strand, within GFF3147 at 581.493 kb on + strand, within GFF3147 at 581.691 kb on + strand, within GFF3147 at 581.965 kb on - strand at 582.335 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.939 kb on - strand, within GFF3148
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 579,866 + +0.5 579,866 + +0.5 579,938 - -1.0 580,210 + GFF3146 0.54 -1.9 580,210 + GFF3146 0.54 -1.8 580,210 + GFF3146 0.54 +0.1 580,211 - GFF3146 0.54 -2.0 580,464 + +1.2 580,513 - +3.6 580,513 - +0.3 580,513 - +0.2 580,523 + -2.4 580,523 + -1.7 580,523 + -1.7 580,524 - -2.0 580,524 - +1.8 580,558 - +0.5 580,699 - -1.2 580,699 - -0.3 581,016 + GFF3147 0.29 +0.1 581,016 + GFF3147 0.29 +0.1 581,017 - GFF3147 0.30 +0.9 581,211 + GFF3147 0.44 -1.2 581,493 + GFF3147 0.64 -3.2 581,691 + GFF3147 0.78 -1.3 581,965 - +0.4 582,335 + GFF3148 0.31 -1.3 582,932 + GFF3148 0.85 +1.1 582,932 + GFF3148 0.85 +1.3 582,933 - GFF3148 0.85 -2.0 582,933 - GFF3148 0.85 -0.0 582,933 - GFF3148 0.85 +0.5 582,933 - GFF3148 0.85 -0.5 582,938 + GFF3148 0.85 +2.0 582,938 + GFF3148 0.85 -0.0 582,938 + GFF3148 0.85 -0.2 582,939 - GFF3148 0.85 +0.4
Or see this region's nucleotide sequence