Strain Fitness in Variovorax sp. SCN45 around GFF3078

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3077 and GFF3078 are separated by 52 nucleotidesGFF3078 and GFF3079 are separated by 261 nucleotidesGFF3079 and GFF3080 are separated by 78 nucleotidesGFF3080 and GFF3081 are separated by 33 nucleotides GFF3077 - Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13), at 509,700 to 511,436 GFF3077 GFF3078 - SAM-dependent methyltransferase, at 511,489 to 513,090 GFF3078 GFF3079 - hypothetical protein, at 513,352 to 513,627 GFF3079 GFF3080 - no description, at 513,706 to 513,840 GFF3080 GFF3081 - no description, at 513,874 to 513,993 GFF3081 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 510.520 kb on + strand, within GFF3077at 510.521 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.824 kb on - strand, within GFF3077at 510.985 kb on + strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 511.000 kb on + strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.207 kb on + strand, within GFF3077at 511.208 kb on - strand, within GFF3077at 511.208 kb on - strand, within GFF3077at 511.226 kb on - strand, within GFF3077at 511.453 kb on + strandat 511.453 kb on + strandat 511.453 kb on + strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.937 kb on - strand, within GFF3078at 511.937 kb on - strand, within GFF3078at 511.937 kb on - strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.295 kb on - strand, within GFF3078at 512.295 kb on - strand, within GFF3078at 512.337 kb on - strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.423 kb on + strand, within GFF3078at 512.423 kb on + strand, within GFF3078at 512.424 kb on - strand, within GFF3078at 512.424 kb on - strand, within GFF3078at 512.531 kb on + strand, within GFF3078at 512.531 kb on + strand, within GFF3078at 512.531 kb on + strand, within GFF3078at 512.531 kb on + strand, within GFF3078at 512.532 kb on - strand, within GFF3078at 512.532 kb on - strand, within GFF3078at 512.619 kb on - strand, within GFF3078at 512.619 kb on - strand, within GFF3078at 512.619 kb on - strand, within GFF3078at 512.619 kb on - strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.627 kb on + strand, within GFF3078at 512.628 kb on - strand, within GFF3078at 512.628 kb on - strand, within GFF3078at 512.628 kb on - strand, within GFF3078at 512.636 kb on + strand, within GFF3078at 512.636 kb on + strand, within GFF3078at 512.637 kb on - strand, within GFF3078at 512.637 kb on - strand, within GFF3078at 512.637 kb on - strand, within GFF3078at 512.637 kb on - strand, within GFF3078at 512.714 kb on + strand, within GFF3078at 512.715 kb on - strand, within GFF3078at 512.735 kb on + strand, within GFF3078at 512.735 kb on + strand, within GFF3078at 512.735 kb on + strand, within GFF3078at 512.735 kb on + strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 512.736 kb on - strand, within GFF3078at 513.033 kb on - strandat 513.033 kb on - strandat 513.047 kb on + strandat 513.047 kb on + strandat 513.047 kb on + strandat 513.047 kb on + strandat 513.047 kb on + strandat 513.048 kb on - strandat 513.048 kb on - strandat 513.048 kb on - strandat 513.050 kb on + strandat 513.050 kb on + strandat 513.050 kb on + strandat 513.051 kb on - strandat 513.101 kb on + strandat 513.101 kb on + strandat 513.101 kb on + strandat 513.101 kb on + strandat 513.102 kb on - strandat 513.102 kb on - strandat 513.102 kb on - strandat 513.102 kb on - strandat 513.118 kb on + strandat 513.118 kb on + strandat 513.118 kb on + strandat 513.118 kb on + strandat 513.118 kb on + strandat 513.118 kb on + strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.119 kb on - strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.120 kb on + strandat 513.121 kb on - strandat 513.121 kb on - strandat 513.121 kb on - strandat 513.121 kb on - strandat 513.176 kb on - strandat 513.313 kb on - strandat 513.317 kb on + strandat 513.318 kb on - strandat 513.318 kb on - strandat 513.326 kb on - strandat 513.505 kb on + strand, within GFF3079at 513.505 kb on + strand, within GFF3079at 513.505 kb on + strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.586 kb on + strand, within GFF3079at 513.587 kb on - strand, within GFF3079at 513.625 kb on + strandat 513.625 kb on + strandat 513.625 kb on + strandat 513.626 kb on - strandat 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.939 kb on + strand, within GFF3081at 513.939 kb on + strand, within GFF3081at 513.939 kb on + strand, within GFF3081at 513.940 kb on - strand, within GFF3081at 513.940 kb on - strand, within GFF3081at 514.070 kb on + strandat 514.070 kb on + strandat 514.070 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
510,520 + GFF3077 0.47 -0.4
510,521 - GFF3077 0.47 -0.0
510,626 - GFF3077 0.53 -0.7
510,626 - GFF3077 0.53 -0.9
510,661 + GFF3077 0.55 +2.8
510,661 + GFF3077 0.55 +0.5
510,661 + GFF3077 0.55 +1.4
510,661 + GFF3077 0.55 -0.2
510,662 - GFF3077 0.55 -3.1
510,662 - GFF3077 0.55 -0.2
510,662 - GFF3077 0.55 +0.9
510,742 + GFF3077 0.60 +1.3
510,742 + GFF3077 0.60 -0.5
510,742 + GFF3077 0.60 -1.5
510,742 + GFF3077 0.60 +1.1
510,742 + GFF3077 0.60 +1.4
510,742 + GFF3077 0.60 -0.2
510,742 + GFF3077 0.60 -1.2
510,743 - GFF3077 0.60 -0.2
510,743 - GFF3077 0.60 +1.6
510,743 - GFF3077 0.60 -1.6
510,743 - GFF3077 0.60 +0.2
510,743 - GFF3077 0.60 -0.5
510,743 - GFF3077 0.60 -1.3
510,743 - GFF3077 0.60 -2.1
510,823 + GFF3077 0.65 -2.3
510,823 + GFF3077 0.65 +4.7
510,823 + GFF3077 0.65 +0.5
510,823 + GFF3077 0.65 -0.5
510,823 + GFF3077 0.65 -1.5
510,824 - GFF3077 0.65 -0.5
510,985 + GFF3077 0.74 -0.2
510,986 - GFF3077 0.74 +0.5
510,986 - GFF3077 0.74 +0.7
510,986 - GFF3077 0.74 -0.7
510,986 - GFF3077 0.74 -1.2
510,986 - GFF3077 0.74 -0.3
510,986 - GFF3077 0.74 -0.0
510,986 - GFF3077 0.74 +0.8
511,000 + GFF3077 0.75 +1.3
511,001 - GFF3077 0.75 -0.6
511,001 - GFF3077 0.75 -2.7
511,001 - GFF3077 0.75 -1.0
511,001 - GFF3077 0.75 +1.5
511,001 - GFF3077 0.75 -1.5
511,090 + GFF3077 0.80 +0.1
511,090 + GFF3077 0.80 -0.4
511,090 + GFF3077 0.80 +0.0
511,090 + GFF3077 0.80 -2.4
511,090 + GFF3077 0.80 +0.2
511,090 + GFF3077 0.80 -0.5
511,090 + GFF3077 0.80 +0.1
511,091 - GFF3077 0.80 -1.0
511,091 - GFF3077 0.80 +0.4
511,091 - GFF3077 0.80 -0.2
511,091 - GFF3077 0.80 -1.1
511,091 - GFF3077 0.80 -0.2
511,091 - GFF3077 0.80 -2.9
511,091 - GFF3077 0.80 -0.5
511,091 - GFF3077 0.80 -0.5
511,091 - GFF3077 0.80 -0.8
511,091 - GFF3077 0.80 +0.4
511,091 - GFF3077 0.80 -2.2
511,091 - GFF3077 0.80 -0.8
511,207 + GFF3077 0.87 +2.1
511,208 - GFF3077 0.87 -0.5
511,208 - GFF3077 0.87 -0.3
511,226 - GFF3077 0.88 -0.2
511,453 + -0.6
511,453 + +1.5
511,453 + -3.2
511,454 - -1.9
511,454 - -2.0
511,454 - -0.0
511,454 - +1.0
511,454 - -0.5
511,937 - GFF3078 0.28 -3.3
511,937 - GFF3078 0.28 -2.6
511,937 - GFF3078 0.28 -3.4
512,228 + GFF3078 0.46 -0.0
512,228 + GFF3078 0.46 -1.7
512,228 + GFF3078 0.46 -2.0
512,228 + GFF3078 0.46 +0.1
512,229 - GFF3078 0.46 +0.2
512,229 - GFF3078 0.46 +0.6
512,229 - GFF3078 0.46 +0.5
512,229 - GFF3078 0.46 -1.2
512,295 - GFF3078 0.50 -2.7
512,295 - GFF3078 0.50 +1.3
512,337 - GFF3078 0.53 +2.1
512,381 + GFF3078 0.56 +0.7
512,381 + GFF3078 0.56 +1.2
512,381 + GFF3078 0.56 -1.9
512,381 + GFF3078 0.56 +1.1
512,382 - GFF3078 0.56 -0.5
512,382 - GFF3078 0.56 +0.6
512,382 - GFF3078 0.56 +1.4
512,382 - GFF3078 0.56 -0.6
512,423 + GFF3078 0.58 -1.3
512,423 + GFF3078 0.58 -0.2
512,424 - GFF3078 0.58 +1.1
512,424 - GFF3078 0.58 -0.2
512,531 + GFF3078 0.65 +2.7
512,531 + GFF3078 0.65 -0.2
512,531 + GFF3078 0.65 -0.7
512,531 + GFF3078 0.65 +0.3
512,532 - GFF3078 0.65 -1.9
512,532 - GFF3078 0.65 -0.6
512,619 - GFF3078 0.71 -1.9
512,619 - GFF3078 0.71 -3.1
512,619 - GFF3078 0.71 +1.5
512,619 - GFF3078 0.71 +1.1
512,627 + GFF3078 0.71 +0.9
512,627 + GFF3078 0.71 -0.5
512,627 + GFF3078 0.71 -0.8
512,627 + GFF3078 0.71 +1.1
512,627 + GFF3078 0.71 +0.3
512,627 + GFF3078 0.71 -0.7
512,628 - GFF3078 0.71 +1.4
512,628 - GFF3078 0.71 -2.5
512,628 - GFF3078 0.71 -1.2
512,636 + GFF3078 0.72 +1.5
512,636 + GFF3078 0.72 +0.1
512,637 - GFF3078 0.72 -1.0
512,637 - GFF3078 0.72 +0.6
512,637 - GFF3078 0.72 +0.9
512,637 - GFF3078 0.72 -1.4
512,714 + GFF3078 0.76 -0.7
512,715 - GFF3078 0.77 -0.9
512,735 + GFF3078 0.78 +2.1
512,735 + GFF3078 0.78 -2.6
512,735 + GFF3078 0.78 +1.5
512,735 + GFF3078 0.78 -1.6
512,736 - GFF3078 0.78 +1.3
512,736 - GFF3078 0.78 -2.2
512,736 - GFF3078 0.78 -1.0
512,736 - GFF3078 0.78 +0.3
512,736 - GFF3078 0.78 -2.7
512,736 - GFF3078 0.78 -0.8
513,033 - -0.5
513,033 - -0.9
513,047 + +0.5
513,047 + -2.5
513,047 + -2.5
513,047 + -1.6
513,047 + -2.9
513,048 - +1.1
513,048 - +1.6
513,048 - -1.0
513,050 + +0.8
513,050 + +0.6
513,050 + +0.5
513,051 - +1.0
513,101 + -0.9
513,101 + +0.3
513,101 + -1.0
513,101 + +0.0
513,102 - +0.5
513,102 - -0.2
513,102 - +0.3
513,102 - -0.8
513,118 + +1.6
513,118 + -1.4
513,118 + -0.3
513,118 + +1.0
513,118 + -0.5
513,118 + -0.1
513,119 - -0.2
513,119 - -1.8
513,119 - -2.3
513,119 - -0.3
513,119 - +0.3
513,119 - +0.3
513,119 - -1.2
513,119 - +1.3
513,120 + -2.3
513,120 + -0.7
513,120 + -0.3
513,120 + -2.7
513,120 + -0.6
513,120 + +1.7
513,120 + -1.3
513,120 + +4.4
513,121 - -0.6
513,121 - -1.4
513,121 - -0.5
513,121 - +3.5
513,176 - -1.8
513,313 - +0.9
513,317 + -2.2
513,318 - -0.1
513,318 - -0.7
513,326 - -2.7
513,505 + GFF3079 0.55 +1.1
513,505 + GFF3079 0.55 +1.1
513,505 + GFF3079 0.55 +1.5
513,506 - GFF3079 0.56 -0.9
513,506 - GFF3079 0.56 -1.0
513,506 - GFF3079 0.56 +0.4
513,580 + GFF3079 0.83 +1.0
513,580 + GFF3079 0.83 +0.4
513,580 + GFF3079 0.83 +1.8
513,580 + GFF3079 0.83 -1.9
513,580 + GFF3079 0.83 -1.1
513,580 + GFF3079 0.83 -1.5
513,580 + GFF3079 0.83 -0.5
513,581 - GFF3079 0.83 +0.1
513,581 - GFF3079 0.83 +2.5
513,581 - GFF3079 0.83 -2.4
513,581 - GFF3079 0.83 -0.2
513,586 + GFF3079 0.85 +0.8
513,587 - GFF3079 0.85 -0.2
513,625 + -2.1
513,625 + -1.5
513,625 + +0.5
513,626 - -1.2
513,742 + GFF3080 0.27 -0.9
513,742 + GFF3080 0.27 -2.8
513,742 + GFF3080 0.27 -0.2
513,742 + GFF3080 0.27 -0.9
513,742 + GFF3080 0.27 +0.0
513,742 + GFF3080 0.27 +0.5
513,742 + GFF3080 0.27 -1.3
513,742 + GFF3080 0.27 -0.1
513,742 + GFF3080 0.27 -0.9
513,742 + GFF3080 0.27 +1.1
513,742 + GFF3080 0.27 -1.4
513,742 + GFF3080 0.27 +0.8
513,742 + GFF3080 0.27 -0.4
513,742 + GFF3080 0.27 -0.6
513,742 + GFF3080 0.27 +2.1
513,742 + GFF3080 0.27 +1.5
513,742 + GFF3080 0.27 +0.1
513,742 + GFF3080 0.27 -0.7
513,742 + GFF3080 0.27 +0.5
513,742 + GFF3080 0.27 -2.7
513,742 + GFF3080 0.27 -0.5
513,742 + GFF3080 0.27 -0.5
513,743 - GFF3080 0.27 -1.3
513,743 - GFF3080 0.27 -0.7
513,743 - GFF3080 0.27 -0.2
513,743 - GFF3080 0.27 -0.1
513,743 - GFF3080 0.27 +1.1
513,743 - GFF3080 0.27 -3.0
513,743 - GFF3080 0.27 -1.1
513,743 - GFF3080 0.27 -1.7
513,743 - GFF3080 0.27 +1.0
513,743 - GFF3080 0.27 +1.1
513,743 - GFF3080 0.27 -2.5
513,743 - GFF3080 0.27 +0.1
513,743 - GFF3080 0.27 -1.5
513,743 - GFF3080 0.27 +0.2
513,743 - GFF3080 0.27 +0.0
513,743 - GFF3080 0.27 +0.1
513,743 - GFF3080 0.27 -1.6
513,743 - GFF3080 0.27 -2.1
513,743 - GFF3080 0.27 +1.1
513,743 - GFF3080 0.27 +0.7
513,743 - GFF3080 0.27 +1.5
513,761 - GFF3080 0.41 -2.2
513,761 - GFF3080 0.41 +2.0
513,761 - GFF3080 0.41 +1.6
513,761 - GFF3080 0.41 +1.0
513,939 + GFF3081 0.54 -0.2
513,939 + GFF3081 0.54 +0.1
513,939 + GFF3081 0.54 -0.4
513,940 - GFF3081 0.55 +0.6
513,940 - GFF3081 0.55 -0.0
514,070 + -0.6
514,070 + -0.2
514,070 + +0.4

Or see this region's nucleotide sequence