Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3027 and GFF3028 are separated by 5 nucleotides GFF3028 and GFF3029 are separated by 58 nucleotides GFF3029 and GFF3030 overlap by 1 nucleotides
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
GFF3028 - T6SS outer membrane component TssL (ImpK/VasF), at 456,521 to 457,282
GFF3028
GFF3029 - T6SS component TssM (IcmF/VasK), at 457,341 to 461,426
GFF3029
GFF3030 - Uncharacterized protein ImpA, at 461,426 to 462,625
GFF3030
Position (kb) 457
458
459
460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 456.394 kb on - strand at 456.584 kb on + strand at 456.755 kb on + strand, within GFF3028 at 456.755 kb on + strand, within GFF3028 at 456.756 kb on - strand, within GFF3028 at 456.941 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.419 kb on + strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.732 kb on - strand at 457.804 kb on - strand, within GFF3029 at 457.966 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.085 kb on + strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.244 kb on + strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.275 kb on - strand, within GFF3029 at 458.304 kb on + strand, within GFF3029 at 458.695 kb on + strand, within GFF3029 at 458.695 kb on + strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 459.055 kb on - strand, within GFF3029 at 459.156 kb on + strand, within GFF3029 at 459.204 kb on + strand, within GFF3029 at 459.510 kb on + strand, within GFF3029 at 459.511 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 460.035 kb on + strand, within GFF3029 at 460.035 kb on + strand, within GFF3029 at 460.188 kb on + strand, within GFF3029 at 460.285 kb on - strand, within GFF3029 at 460.285 kb on - strand, within GFF3029 at 460.339 kb on - strand, within GFF3029 at 460.339 kb on - strand, within GFF3029 at 460.578 kb on + strand, within GFF3029 at 460.578 kb on + strand, within GFF3029 at 460.579 kb on - strand, within GFF3029 at 460.579 kb on - strand, within GFF3029 at 460.602 kb on + strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.615 kb on - strand, within GFF3029 at 461.053 kb on - strand at 461.564 kb on + strand, within GFF3030 at 462.314 kb on + strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.318 kb on + strand, within GFF3030 at 462.318 kb on + strand, within GFF3030 at 462.319 kb on - strand, within GFF3030 at 462.319 kb on - strand, within GFF3030
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 456,394 - -0.8 456,584 + -0.3 456,755 + GFF3028 0.31 -0.2 456,755 + GFF3028 0.31 -2.5 456,756 - GFF3028 0.31 -1.7 456,941 + GFF3028 0.55 -1.4 457,094 + GFF3028 0.75 +1.4 457,094 + GFF3028 0.75 -0.4 457,419 + -0.6 457,420 - -0.9 457,420 - -0.7 457,420 - +0.7 457,732 - +0.3 457,804 - GFF3029 0.11 -2.1 457,966 - GFF3029 0.15 -0.2 458,068 - GFF3029 0.18 +0.7 458,068 - GFF3029 0.18 -1.7 458,085 + GFF3029 0.18 -0.5 458,086 - GFF3029 0.18 +0.2 458,086 - GFF3029 0.18 +1.1 458,086 - GFF3029 0.18 -1.6 458,086 - GFF3029 0.18 -0.5 458,244 + GFF3029 0.22 -0.7 458,245 - GFF3029 0.22 -1.9 458,245 - GFF3029 0.22 -0.8 458,275 - GFF3029 0.23 -1.8 458,304 + GFF3029 0.24 -0.2 458,695 + GFF3029 0.33 +0.8 458,695 + GFF3029 0.33 -0.2 458,770 - GFF3029 0.35 -0.8 458,770 - GFF3029 0.35 -0.1 458,770 - GFF3029 0.35 -0.2 458,770 - GFF3029 0.35 -1.6 459,055 - GFF3029 0.42 -0.1 459,156 + GFF3029 0.44 -1.2 459,204 + GFF3029 0.46 -1.6 459,510 + GFF3029 0.53 -2.9 459,511 - GFF3029 0.53 +1.0 459,856 - GFF3029 0.62 +1.0 459,856 - GFF3029 0.62 +0.0 459,856 - GFF3029 0.62 -2.1 459,856 - GFF3029 0.62 +0.1 460,035 + GFF3029 0.66 -2.6 460,035 + GFF3029 0.66 -0.7 460,188 + GFF3029 0.70 -3.5 460,285 - GFF3029 0.72 +0.5 460,285 - GFF3029 0.72 -2.5 460,339 - GFF3029 0.73 -0.5 460,339 - GFF3029 0.73 +2.4 460,578 + GFF3029 0.79 +0.5 460,578 + GFF3029 0.79 -1.8 460,579 - GFF3029 0.79 -3.0 460,579 - GFF3029 0.79 -0.2 460,602 + GFF3029 0.80 +0.3 460,603 - GFF3029 0.80 -1.3 460,603 - GFF3029 0.80 -2.9 460,603 - GFF3029 0.80 -1.0 460,615 - GFF3029 0.80 -0.3 461,053 - -1.2 461,564 + GFF3030 0.12 -1.7 462,314 + GFF3030 0.74 -0.7 462,315 - GFF3030 0.74 -2.7 462,315 - GFF3030 0.74 +0.4 462,315 - GFF3030 0.74 -1.0 462,315 - GFF3030 0.74 -3.0 462,318 + GFF3030 0.74 -1.6 462,318 + GFF3030 0.74 -2.6 462,319 - GFF3030 0.74 -1.8 462,319 - GFF3030 0.74 +0.6
Or see this region's nucleotide sequence