Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2946 and GFF2947 overlap by 4 nucleotides GFF2947 and GFF2948 are separated by 10 nucleotides GFF2948 and GFF2949 are separated by 145 nucleotides GFF2949 and GFF2950 are separated by 7 nucleotides
GFF2946 - Regulator of competence-specific genes, at 371,387 to 371,797
GFF2946
GFF2947 - 3'-5' exonuclease, at 371,794 to 372,408
GFF2947
GFF2948 - salicylate esterase, at 372,419 to 373,147
GFF2948
GFF2949 - no description, at 373,293 to 373,619
GFF2949
GFF2950 - Arsenite/antimonite:H+ antiporter ArsB, at 373,627 to 374,919
GFF2950
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.550 kb on - strand, within GFF2946 at 371.550 kb on - strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.615 kb on + strand, within GFF2946 at 371.616 kb on - strand, within GFF2946 at 371.681 kb on + strand, within GFF2946 at 372.156 kb on - strand, within GFF2947 at 372.156 kb on - strand, within GFF2947 at 372.364 kb on + strand at 372.364 kb on + strand at 372.364 kb on + strand at 372.364 kb on + strand at 372.365 kb on - strand at 372.365 kb on - strand at 372.365 kb on - strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.679 kb on - strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.796 kb on - strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.918 kb on + strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.967 kb on - strand, within GFF2948 at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.184 kb on + strand at 373.184 kb on + strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.207 kb on + strand at 373.207 kb on + strand at 373.509 kb on + strand, within GFF2949 at 373.509 kb on + strand, within GFF2949 at 373.510 kb on - strand, within GFF2949 at 373.762 kb on - strand, within GFF2950
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 371,519 + GFF2946 0.32 +0.3 371,519 + GFF2946 0.32 +1.3 371,519 + GFF2946 0.32 -3.3 371,519 + GFF2946 0.32 -0.6 371,519 + GFF2946 0.32 -1.5 371,519 + GFF2946 0.32 +0.1 371,520 - GFF2946 0.32 +2.3 371,520 - GFF2946 0.32 +0.8 371,520 - GFF2946 0.32 +0.9 371,549 + GFF2946 0.39 -1.7 371,549 + GFF2946 0.39 +1.4 371,549 + GFF2946 0.39 +1.0 371,549 + GFF2946 0.39 -1.1 371,550 - GFF2946 0.40 +0.8 371,550 - GFF2946 0.40 +0.6 371,582 + GFF2946 0.47 -0.7 371,582 + GFF2946 0.47 -2.9 371,582 + GFF2946 0.47 -2.4 371,582 + GFF2946 0.47 -0.2 371,583 - GFF2946 0.48 +3.6 371,583 - GFF2946 0.48 +1.8 371,583 - GFF2946 0.48 -0.7 371,615 + GFF2946 0.55 -0.5 371,616 - GFF2946 0.56 -1.0 371,681 + GFF2946 0.72 +0.5 372,156 - GFF2947 0.59 +1.2 372,156 - GFF2947 0.59 -0.3 372,364 + -0.9 372,364 + +1.0 372,364 + -2.7 372,364 + +0.6 372,365 - +0.4 372,365 - -1.2 372,365 - -0.8 372,382 + +1.1 372,382 + +1.3 372,382 + +0.5 372,382 + +2.1 372,382 + +1.0 372,382 + +1.1 372,383 - +0.1 372,383 - +1.5 372,383 - -2.3 372,383 - -1.9 372,383 - -0.2 372,588 + GFF2948 0.23 +1.9 372,588 + GFF2948 0.23 +3.4 372,588 + GFF2948 0.23 +0.2 372,588 + GFF2948 0.23 -0.2 372,588 + GFF2948 0.23 -0.6 372,589 - GFF2948 0.23 -0.2 372,589 - GFF2948 0.23 +1.4 372,589 - GFF2948 0.23 -0.9 372,589 - GFF2948 0.23 +2.5 372,679 - GFF2948 0.36 +0.1 372,795 + GFF2948 0.52 -0.3 372,795 + GFF2948 0.52 -0.2 372,795 + GFF2948 0.52 +1.8 372,795 + GFF2948 0.52 +0.8 372,795 + GFF2948 0.52 +2.7 372,795 + GFF2948 0.52 +0.7 372,795 + GFF2948 0.52 -1.0 372,795 + GFF2948 0.52 +1.9 372,796 - GFF2948 0.52 -2.2 372,855 + GFF2948 0.60 -0.9 372,855 + GFF2948 0.60 -0.1 372,855 + GFF2948 0.60 +1.2 372,855 + GFF2948 0.60 +0.2 372,855 + GFF2948 0.60 +0.3 372,855 + GFF2948 0.60 +0.5 372,855 + GFF2948 0.60 -1.7 372,855 + GFF2948 0.60 -1.0 372,856 - GFF2948 0.60 -1.9 372,856 - GFF2948 0.60 -0.7 372,856 - GFF2948 0.60 -2.3 372,918 + GFF2948 0.68 +2.6 372,919 - GFF2948 0.69 -1.4 372,919 - GFF2948 0.69 +0.5 372,966 + GFF2948 0.75 +0.5 372,966 + GFF2948 0.75 -0.5 372,967 - GFF2948 0.75 -0.0 373,134 + -1.0 373,134 + +1.5 373,134 + +1.5 373,134 + -0.2 373,134 + +0.9 373,134 + -0.6 373,134 + -2.1 373,134 + -1.8 373,134 + +1.1 373,134 + -0.0 373,134 + -2.5 373,134 + +1.2 373,134 + -1.6 373,134 + -1.0 373,134 + +1.7 373,134 + +0.1 373,134 + -2.4 373,134 + -2.6 373,134 + +0.1 373,134 + +3.7 373,134 + -0.2 373,134 + -1.3 373,134 + +0.6 373,134 + -0.2 373,134 + -0.7 373,134 + +0.3 373,134 + -0.4 373,134 + +0.0 373,135 - +0.5 373,135 - -1.9 373,135 - -1.0 373,135 - +0.7 373,135 - -0.5 373,135 - -2.3 373,135 - +0.2 373,135 - +0.5 373,135 - -0.3 373,135 - +3.5 373,135 - +1.0 373,135 - -1.9 373,135 - +1.1 373,135 - -0.2 373,135 - -0.2 373,135 - -0.9 373,135 - +1.6 373,135 - -1.3 373,135 - -0.5 373,135 - +2.5 373,135 - -1.6 373,135 - -0.1 373,135 - -2.5 373,135 - +0.1 373,135 - -2.6 373,135 - -0.6 373,135 - -0.9 373,135 - -0.3 373,138 + -0.7 373,138 + -1.5 373,138 + -1.3 373,138 + +0.0 373,138 + -2.0 373,138 + +0.6 373,138 + +0.5 373,138 + +0.2 373,138 + -0.9 373,138 + -1.4 373,138 + +1.2 373,138 + -0.9 373,138 + -0.3 373,138 + -0.2 373,138 + -0.7 373,138 + -0.7 373,138 + +0.7 373,138 + -0.1 373,139 - +1.1 373,139 - -2.0 373,139 - +0.2 373,139 - -0.4 373,139 - -3.5 373,139 - -2.0 373,139 - -1.5 373,139 - +0.5 373,139 - -2.2 373,139 - -0.7 373,139 - -0.9 373,139 - +0.9 373,139 - +0.8 373,139 - +4.1 373,139 - +1.4 373,139 - -3.0 373,139 - -1.0 373,139 - -0.2 373,139 - -2.8 373,139 - -1.0 373,139 - -1.9 373,139 - -2.2 373,139 - -0.7 373,184 + +0.9 373,184 + -1.7 373,185 - +2.3 373,185 - -1.3 373,185 - -1.3 373,185 - -0.8 373,207 + -1.2 373,207 + -1.4 373,509 + GFF2949 0.66 -0.5 373,509 + GFF2949 0.66 +2.5 373,510 - GFF2949 0.66 -0.9 373,762 - GFF2950 0.10 -2.3
Or see this region's nucleotide sequence