Strain Fitness in Variovorax sp. SCN45 around GFF2933

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
359,826	+		GFF2932	0.50	+0.1
359,826	+		GFF2932	0.50	-1.4
359,826	+		GFF2932	0.50	-0.8
359,826	+		GFF2932	0.50	-0.1
359,826	+		GFF2932	0.50	+2.1
359,826	+		GFF2932	0.50	-0.2
359,826	+		GFF2932	0.50	-0.7
359,826	+		GFF2932	0.50	-1.2
359,826	+		GFF2932	0.50	-2.3
359,826	+		GFF2932	0.50	+0.0
359,826	+		GFF2932	0.50	+0.2
359,826	+		GFF2932	0.50	+0.7
359,827	-		GFF2932	0.50	-0.2
359,827	-		GFF2932	0.50	+0.1
359,827	-		GFF2932	0.50	-1.3
359,827	-		GFF2932	0.50	-2.9
359,827	-		GFF2932	0.50	+0.5
359,827	-		GFF2932	0.50	-1.2
359,827	-		GFF2932	0.50	-1.6
359,827	-		GFF2932	0.50	-2.5
359,827	-		GFF2932	0.50	-1.6
359,827	-		GFF2932	0.50	-3.6
359,827	-		GFF2932	0.50	-1.8
359,827	-		GFF2932	0.50	+1.1
359,827	-		GFF2932	0.50	-1.9
359,827	-		GFF2932	0.50	-1.3
359,827	-		GFF2932	0.50	+2.1
359,827	-		GFF2932	0.50	-0.9
359,844	+		GFF2932	0.51	-0.5
359,844	+		GFF2932	0.51	+0.7
359,844	+		GFF2932	0.51	-1.8
359,845	-		GFF2932	0.51	+0.5
359,845	-		GFF2932	0.51	-1.5
359,877	+		GFF2932	0.53	-0.4
359,877	+		GFF2932	0.53	-0.1
359,877	+		GFF2932	0.53	-2.5
359,878	-		GFF2932	0.53	-1.2
359,878	-		GFF2932	0.53	+1.4
359,878	-		GFF2932	0.53	-1.3
359,878	-		GFF2932	0.53	+0.7
359,878	-		GFF2932	0.53	-0.9
359,878	-		GFF2932	0.53	-1.8
359,878	-		GFF2932	0.53	-2.7
359,878	-		GFF2932	0.53	+0.1
359,878	-		GFF2932	0.53	-1.3
359,878	-		GFF2932	0.53	-1.9
359,878	-		GFF2932	0.53	-0.5
360,015	+		GFF2932	0.60	-3.3
360,015	+		GFF2932	0.60	-0.4
360,015	+		GFF2932	0.60	-0.8
360,015	+		GFF2932	0.60	+0.5
360,015	+		GFF2932	0.60	-0.7
360,015	+		GFF2932	0.60	+0.6
360,015	+		GFF2932	0.60	+1.4
360,015	+		GFF2932	0.60	+1.1
360,015	+		GFF2932	0.60	+0.6
360,016	-		GFF2932	0.60	+1.0
360,016	-		GFF2932	0.60	-3.1
360,016	-		GFF2932	0.60	+0.2
360,016	-		GFF2932	0.60	-1.8
360,016	-		GFF2932	0.60	-0.7
360,016	-		GFF2932	0.60	+1.5
360,016	-		GFF2932	0.60	-2.3
360,069	+		GFF2932	0.63	+0.1
360,079	-		GFF2932	0.63	-0.9
360,079	-		GFF2932	0.63	+0.5
360,079	-		GFF2932	0.63	-0.6
360,195	+		GFF2932	0.69	-0.1
360,195	+		GFF2932	0.69	+0.1
360,195	+		GFF2932	0.69	-1.6
360,195	+		GFF2932	0.69	-2.0
360,195	+		GFF2932	0.69	-1.7
360,195	+		GFF2932	0.69	+1.2
360,195	+		GFF2932	0.69	-0.5
360,195	+		GFF2932	0.69	-2.6
360,195	+		GFF2932	0.69	-0.5
360,195	+		GFF2932	0.69	-2.7
360,195	+		GFF2932	0.69	+0.0
360,195	+		GFF2932	0.69	+1.1
360,195	+		GFF2932	0.69	+0.3
360,195	+		GFF2932	0.69	-0.7
360,195	+		GFF2932	0.69	-1.0
360,195	+		GFF2932	0.69	-1.3
360,195	+		GFF2932	0.69	-0.9
360,195	+		GFF2932	0.69	-0.7
360,195	+		GFF2932	0.69	-1.0
360,196	-		GFF2932	0.69	+0.4
360,196	-		GFF2932	0.69	+2.9
360,196	-		GFF2932	0.69	+1.4
360,196	-		GFF2932	0.69	-0.3
360,196	-		GFF2932	0.69	+0.4
360,196	-		GFF2932	0.69	+0.1
360,196	-		GFF2932	0.69	+1.5
360,196	-		GFF2932	0.69	-3.6
360,196	-		GFF2932	0.69	-2.6
360,196	-		GFF2932	0.69	-1.0
360,196	-		GFF2932	0.69	-2.3
360,196	-		GFF2932	0.69	-1.5
360,196	-		GFF2932	0.69	-0.9
360,196	-		GFF2932	0.69	-1.5
360,196	-		GFF2932	0.69	+0.2
360,196	-		GFF2932	0.69	+0.7
360,196	-		GFF2932	0.69	-0.2
360,196	-		GFF2932	0.69	+0.8
360,196	-		GFF2932	0.69	-0.9
360,196	-		GFF2932	0.69	-2.4
360,196	-		GFF2932	0.69	-2.1
360,196	-		GFF2932	0.69	-2.1
360,196	-		GFF2932	0.69	-0.7
360,196	-		GFF2932	0.69	-2.1
360,196	-		GFF2932	0.69	+2.1
360,196	-		GFF2932	0.69	-2.0
360,196	-		GFF2932	0.69	-1.5
360,196	-		GFF2932	0.69	-0.5
360,196	-		GFF2932	0.69	-0.3
360,196	-		GFF2932	0.69	-0.7
360,252	+		GFF2932	0.72	+2.4
360,252	+		GFF2932	0.72	+0.1
360,252	+		GFF2932	0.72	-2.0
360,252	+		GFF2932	0.72	-1.3
360,252	+		GFF2932	0.72	-1.3
360,252	+		GFF2932	0.72	+1.7
360,252	+		GFF2932	0.72	-1.0
360,252	+		GFF2932	0.72	+2.3
360,252	+		GFF2932	0.72	-1.2
360,252	+		GFF2932	0.72	-0.8
360,252	+		GFF2932	0.72	-0.5
360,252	+		GFF2932	0.72	+1.8
360,252	+		GFF2932	0.72	+1.1
360,252	+		GFF2932	0.72	+0.4
360,252	+		GFF2932	0.72	-1.5
360,253	-		GFF2932	0.72	-0.5
360,253	-		GFF2932	0.72	-2.0
360,253	-		GFF2932	0.72	-0.1
360,253	-		GFF2932	0.72	-1.2
360,253	-		GFF2932	0.72	-3.6
360,253	-		GFF2932	0.72	+0.5
360,253	-		GFF2932	0.72	-2.7
360,253	-		GFF2932	0.72	-1.7
360,253	-		GFF2932	0.72	+0.8
360,253	-		GFF2932	0.72	+0.1
360,253	-		GFF2932	0.72	-1.0
360,253	-		GFF2932	0.72	-1.5
360,253	-		GFF2932	0.72	-0.9
360,253	-		GFF2932	0.72	-1.1
360,253	-		GFF2932	0.72	-0.7
360,261	+		GFF2932	0.73	-1.5
360,261	+		GFF2932	0.73	-0.9
360,261	+		GFF2932	0.73	+1.3
360,261	+		GFF2932	0.73	+0.8
360,261	+		GFF2932	0.73	-1.3
360,261	+		GFF2932	0.73	-0.8
360,262	-		GFF2932	0.73	-1.4
360,262	-		GFF2932	0.73	+0.3
360,262	-		GFF2932	0.73	+1.2
360,262	-		GFF2932	0.73	-0.9
360,262	-		GFF2932	0.73	-1.9
360,262	-		GFF2932	0.73	-0.5
360,262	-		GFF2932	0.73	-0.8
360,262	-		GFF2932	0.73	+0.5
360,262	-		GFF2932	0.73	-0.4
360,274	+		GFF2932	0.73	-2.5
360,274	+		GFF2932	0.73	-1.2
360,274	+		GFF2932	0.73	+0.4
360,274	+		GFF2932	0.73	+0.0
360,274	+		GFF2932	0.73	-1.3
360,274	+		GFF2932	0.73	-2.3
360,274	+		GFF2932	0.73	-1.5
360,274	+		GFF2932	0.73	-2.0
360,274	+		GFF2932	0.73	+0.3
360,274	+		GFF2932	0.73	-2.0
360,274	+		GFF2932	0.73	-0.5
360,274	+		GFF2932	0.73	+0.5
360,274	+		GFF2932	0.73	-2.0
360,275	-		GFF2932	0.73	+1.1
360,275	-		GFF2932	0.73	-2.2
360,275	-		GFF2932	0.73	+0.6
360,275	-		GFF2932	0.73	-0.6
360,288	+		GFF2932	0.74	-0.5
360,288	+		GFF2932	0.74	-1.3
360,324	+		GFF2932	0.76	-1.6
360,324	+		GFF2932	0.76	+1.1
360,324	+		GFF2932	0.76	-1.1
360,324	+		GFF2932	0.76	-0.9
360,336	+		GFF2932	0.76	+0.5
360,336	+		GFF2932	0.76	-0.2
360,336	+		GFF2932	0.76	-3.5
360,336	+		GFF2932	0.76	+0.1
360,336	+		GFF2932	0.76	-0.2
360,336	+		GFF2932	0.76	+0.5
360,336	+		GFF2932	0.76	-1.2
360,336	+		GFF2932	0.76	-1.9
360,336	+		GFF2932	0.76	-0.4
360,337	-		GFF2932	0.76	+1.9
360,337	-		GFF2932	0.76	+1.0
360,337	-		GFF2932	0.76	+2.1
360,337	-		GFF2932	0.76	+0.5
360,337	-		GFF2932	0.76	-1.1
360,337	-		GFF2932	0.76	+1.0
360,337	-		GFF2932	0.76	-2.3
360,337	-		GFF2932	0.76	-0.5
360,337	-		GFF2932	0.76	-3.4
360,337	-		GFF2932	0.76	+1.6
360,337	-		GFF2932	0.76	-1.7
360,337	-		GFF2932	0.76	-0.4
360,345	+		GFF2932	0.77	-1.3
360,369	+		GFF2932	0.78	+2.3
360,369	+		GFF2932	0.78	-1.0
360,369	+		GFF2932	0.78	-0.0
360,370	-		GFF2932	0.78	-0.7
360,370	-		GFF2932	0.78	+2.2
360,370	-		GFF2932	0.78	+0.8
360,370	-		GFF2932	0.78	-0.4
360,378	+		GFF2932	0.79	+0.7
360,378	+		GFF2932	0.79	-0.6
360,378	+		GFF2932	0.79	-1.8
360,378	+		GFF2932	0.79	+0.5
360,379	-		GFF2932	0.79	-0.2
360,379	-		GFF2932	0.79	-2.3
360,379	-		GFF2932	0.79	+0.0
360,388	-		GFF2932	0.79	+0.5
360,388	-		GFF2932	0.79	-1.1
360,388	-		GFF2932	0.79	+0.9
360,388	-		GFF2932	0.79	+0.4
360,582	+		GFF2932	0.89	+0.8
360,582	+		GFF2932	0.89	-0.0
360,582	+		GFF2932	0.89	-0.7
360,582	+		GFF2932	0.89	-0.5
360,583	-		GFF2932	0.89	-2.0
360,583	-		GFF2932	0.89	-0.7
360,613	-				+0.1
360,726	+				-0.5
360,726	+				-1.5
360,726	+				-0.7
360,727	-				+0.5
360,727	-				+2.3
360,727	-				-1.9
360,762	+				-2.4
360,762	+				-1.7
360,762	+				-1.6
360,763	-				+0.0
360,763	-				+0.2
360,763	-				-1.3
360,763	-				-0.1
360,790	-				+0.9
360,790	-				-1.8
360,790	-				-1.3
360,790	-				-1.6
360,913	+				+3.1
360,914	-				-1.2
361,013	+				-1.1
361,013	+				-1.4
361,013	+				+1.5
361,013	+				+1.1
361,014	-				-0.8
361,014	-				-1.5
361,014	-				-1.0
361,014	-				-1.1
361,014	-				+0.5
361,014	-				-0.3
361,014	-				+2.1
361,157	+		GFF2934	0.18	+0.9
361,157	+		GFF2934	0.18	+2.1
361,157	+		GFF2934	0.18	+0.3
361,157	+		GFF2934	0.18	+1.1
361,157	+		GFF2934	0.18	+0.6
361,157	+		GFF2934	0.18	-0.2
361,157	+		GFF2934	0.18	-2.1
361,158	-		GFF2934	0.18	-0.7
361,158	-		GFF2934	0.18	-0.1
361,158	-		GFF2934	0.18	-1.7
361,158	-		GFF2934	0.18	+0.1
361,158	-		GFF2934	0.18	-1.5
361,158	-		GFF2934	0.18	+4.5
361,158	-		GFF2934	0.18	+0.1
361,181	+		GFF2934	0.19	-3.3
361,181	+		GFF2934	0.19	-3.5
361,181	+		GFF2934	0.19	-1.0
361,181	+		GFF2934	0.19	-1.5
361,182	-		GFF2934	0.20	-0.8
361,182	-		GFF2934	0.20	-0.5
361,182	-		GFF2934	0.20	-1.7
361,182	-		GFF2934	0.20	-0.2
361,182	-		GFF2934	0.20	+0.9
361,182	-		GFF2934	0.20	-2.1
361,182	-		GFF2934	0.20	-1.9
361,182	-		GFF2934	0.20	+1.1
361,182	-		GFF2934	0.20	-0.7
361,560	+		GFF2934	0.49	-2.2
361,560	+		GFF2934	0.49	+0.1
361,560	+		GFF2934	0.49	-1.3
361,560	+		GFF2934	0.49	+0.1
361,560	+		GFF2934	0.49	-0.9
361,560	+		GFF2934	0.49	-1.0
361,561	-		GFF2934	0.49	-1.5
361,561	-		GFF2934	0.49	-3.3
361,561	-		GFF2934	0.49	+0.1
361,561	-		GFF2934	0.49	+0.1
361,561	-		GFF2934	0.49	-4.4
361,561	-		GFF2934	0.49	+0.6
361,593	+		GFF2934	0.51	+0.8
361,593	+		GFF2934	0.51	-1.3
361,593	+		GFF2934	0.51	-0.7
361,593	+		GFF2934	0.51	-0.7
361,593	+		GFF2934	0.51	-0.0
361,593	+		GFF2934	0.51	-1.7
361,593	+		GFF2934	0.51	-1.0
361,593	+		GFF2934	0.51	+2.0
361,593	+		GFF2934	0.51	+1.1
361,593	+		GFF2934	0.51	-0.5
361,593	+		GFF2934	0.51	-1.0
361,593	+		GFF2934	0.51	-1.5
361,593	+		GFF2934	0.51	+1.2
361,593	+		GFF2934	0.51	-2.3
361,593	+		GFF2934	0.51	-2.0
361,593	+		GFF2934	0.51	-2.0
361,594	-		GFF2934	0.51	-0.6
361,594	-		GFF2934	0.51	-3.9
361,594	-		GFF2934	0.51	-0.6
361,628	+		GFF2934	0.54	-1.3
361,628	+		GFF2934	0.54	+0.1
361,628	+		GFF2934	0.54	-1.0
361,628	+		GFF2934	0.54	-1.5
361,628	+		GFF2934	0.54	+0.1
361,628	+		GFF2934	0.54	+1.1
361,628	+		GFF2934	0.54	-0.2
361,628	+		GFF2934	0.54	-0.1
361,628	+		GFF2934	0.54	-0.6
361,628	+		GFF2934	0.54	-1.4
361,629	-		GFF2934	0.54	-1.1
361,629	-		GFF2934	0.54	+1.4
361,629	-		GFF2934	0.54	-1.2
361,629	-		GFF2934	0.54	-2.0
361,775	+		GFF2934	0.65	+0.9
361,775	+		GFF2934	0.65	+0.1
361,775	+		GFF2934	0.65	+1.0
361,775	+		GFF2934	0.65	+1.1
361,775	+		GFF2934	0.65	-1.3
361,775	+		GFF2934	0.65	-2.7
361,775	+		GFF2934	0.65	-0.4
361,775	+		GFF2934	0.65	-0.2
361,775	+		GFF2934	0.65	-0.5
361,775	+		GFF2934	0.65	-0.9
361,775	+		GFF2934	0.65	+0.2
361,775	+		GFF2934	0.65	-2.3
361,775	+		GFF2934	0.65	-0.6
361,775	+		GFF2934	0.65	+0.5
361,775	+		GFF2934	0.65	-2.2
361,775	+		GFF2934	0.65	-1.3
361,775	+		GFF2934	0.65	-1.4
361,775	+		GFF2934	0.65	-0.2
361,775	+		GFF2934	0.65	+0.7
361,775	+		GFF2934	0.65	+0.9
361,775	+		GFF2934	0.65	-3.5
361,775	+		GFF2934	0.65	-1.1
361,775	+		GFF2934	0.65	-1.8
361,775	+		GFF2934	0.65	+1.7
361,775	+		GFF2934	0.65	-0.3
361,775	+		GFF2934	0.65	-0.0
361,775	+		GFF2934	0.65	-0.7
361,775	+		GFF2934	0.65	+0.1
361,775	+		GFF2934	0.65	-0.7
361,775	+		GFF2934	0.65	-0.5
361,775	+		GFF2934	0.65	-0.3
361,775	+		GFF2934	0.65	-1.9
361,775	+		GFF2934	0.65	-2.7
361,775	+		GFF2934	0.65	-0.2
361,775	+		GFF2934	0.65	-0.4
361,775	+		GFF2934	0.65	-2.0
361,775	+		GFF2934	0.65	-1.5
361,775	+		GFF2934	0.65	+0.1
361,775	+		GFF2934	0.65	+0.5
361,775	+		GFF2934	0.65	-1.7
361,775	+		GFF2934	0.65	-0.5
361,775	+		GFF2934	0.65	+1.1
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