Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2889 and GFF2890 overlap by 4 nucleotides GFF2890 and GFF2891 are separated by 0 nucleotides GFF2891 and GFF2892 are separated by 142 nucleotides
GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491
GFF2889
GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486
GFF2890
GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359
GFF2891
GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674
GFF2892
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.603 kb on + strand, within GFF2890 at 315.603 kb on + strand, within GFF2890 at 315.604 kb on - strand, within GFF2890 at 315.673 kb on - strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.960 kb on + strand, within GFF2890 at 315.961 kb on - strand, within GFF2890 at 315.981 kb on + strand, within GFF2890 at 315.982 kb on - strand, within GFF2890 at 316.246 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890 at 316.555 kb on - strand at 316.555 kb on - strand at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.684 kb on - strand, within GFF2891 at 316.684 kb on - strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.935 kb on + strand, within GFF2891 at 317.034 kb on + strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.119 kb on - strand, within GFF2891 at 317.119 kb on - strand, within GFF2891 at 317.226 kb on + strand, within GFF2891 at 317.226 kb on + strand, within GFF2891 at 317.227 kb on - strand, within GFF2891 at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.367 kb on - strand at 317.367 kb on - strand at 317.504 kb on - strand at 317.557 kb on + strand at 317.557 kb on + strand at 317.557 kb on + strand at 317.557 kb on + strand at 317.558 kb on - strand at 317.558 kb on - strand at 317.558 kb on - strand at 317.558 kb on - strand at 317.558 kb on - strand at 317.576 kb on - strand at 317.593 kb on + strand at 317.593 kb on + strand at 317.593 kb on + strand at 317.594 kb on - strand at 317.594 kb on - strand at 317.594 kb on - strand at 317.728 kb on + strand, within GFF2892 at 317.729 kb on - strand, within GFF2892 at 317.749 kb on + strand, within GFF2892 at 317.750 kb on - strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.848 kb on + strand, within GFF2892 at 317.849 kb on - strand, within GFF2892 at 317.849 kb on - strand, within GFF2892 at 317.849 kb on - strand, within GFF2892 at 318.164 kb on - strand, within GFF2892 at 318.265 kb on + strand, within GFF2892 at 318.265 kb on + strand, within GFF2892 at 318.265 kb on + strand, within GFF2892 at 318.265 kb on + strand, within GFF2892 at 318.265 kb on + strand, within GFF2892 at 318.266 kb on - strand, within GFF2892 at 318.266 kb on - strand, within GFF2892 at 318.266 kb on - strand, within GFF2892 at 318.266 kb on - strand, within GFF2892
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 315,603 + GFF2890 0.12 +0.3 315,603 + GFF2890 0.12 -0.7 315,604 - GFF2890 0.12 +0.5 315,673 - GFF2890 0.19 +2.1 315,813 + GFF2890 0.33 -0.7 315,813 + GFF2890 0.33 +1.6 315,813 + GFF2890 0.33 -1.7 315,814 - GFF2890 0.33 -2.6 315,814 - GFF2890 0.33 +1.8 315,814 - GFF2890 0.33 +0.2 315,814 - GFF2890 0.33 -1.1 315,814 - GFF2890 0.33 -1.2 315,960 + GFF2890 0.47 -3.2 315,961 - GFF2890 0.47 -2.7 315,981 + GFF2890 0.49 -3.1 315,982 - GFF2890 0.49 +0.1 316,246 - GFF2890 0.76 -1.2 316,297 - GFF2890 0.81 -1.6 316,297 - GFF2890 0.81 -0.9 316,555 - +0.3 316,555 - -0.3 316,587 + GFF2891 0.11 -1.0 316,587 + GFF2891 0.11 +2.5 316,587 + GFF2891 0.11 -0.9 316,587 + GFF2891 0.11 -2.0 316,588 - GFF2891 0.12 -0.5 316,588 - GFF2891 0.12 +0.4 316,588 - GFF2891 0.12 +1.1 316,588 - GFF2891 0.12 -1.6 316,588 - GFF2891 0.12 +0.5 316,588 - GFF2891 0.12 -0.5 316,683 + GFF2891 0.22 +0.7 316,683 + GFF2891 0.22 -1.5 316,683 + GFF2891 0.22 -0.5 316,683 + GFF2891 0.22 -1.2 316,684 - GFF2891 0.23 -0.2 316,684 - GFF2891 0.23 +1.4 316,692 + GFF2891 0.23 -1.2 316,692 + GFF2891 0.23 +0.1 316,692 + GFF2891 0.23 +0.3 316,692 + GFF2891 0.23 -0.5 316,692 + GFF2891 0.23 -1.1 316,692 + GFF2891 0.23 -1.0 316,693 - GFF2891 0.24 -1.5 316,693 - GFF2891 0.24 -0.7 316,693 - GFF2891 0.24 -0.7 316,693 - GFF2891 0.24 -1.9 316,693 - GFF2891 0.24 -0.0 316,693 - GFF2891 0.24 +0.4 316,935 + GFF2891 0.51 +1.6 317,034 + GFF2891 0.63 +2.8 317,035 - GFF2891 0.63 -0.4 317,035 - GFF2891 0.63 +0.7 317,035 - GFF2891 0.63 +1.2 317,107 - GFF2891 0.71 -1.5 317,107 - GFF2891 0.71 +0.4 317,107 - GFF2891 0.71 -1.5 317,107 - GFF2891 0.71 -0.5 317,119 - GFF2891 0.72 -0.7 317,119 - GFF2891 0.72 -0.8 317,226 + GFF2891 0.85 -1.5 317,226 + GFF2891 0.85 +0.2 317,227 - GFF2891 0.85 -0.8 317,366 + +0.5 317,366 + -1.6 317,366 + -2.0 317,366 + -3.0 317,366 + +0.0 317,367 - +0.6 317,367 - +2.0 317,504 - -0.5 317,557 + +0.6 317,557 + +0.7 317,557 + -1.7 317,557 + -0.6 317,558 - +0.1 317,558 - -1.7 317,558 - -1.0 317,558 - -1.8 317,558 - -0.6 317,576 - -1.6 317,593 + +3.0 317,593 + -0.5 317,593 + -0.7 317,594 - -2.3 317,594 - -1.0 317,594 - +0.3 317,728 + GFF2892 0.19 -0.3 317,729 - GFF2892 0.19 +0.5 317,749 + GFF2892 0.21 -1.9 317,750 - GFF2892 0.21 +1.1 317,848 + GFF2892 0.29 +0.4 317,848 + GFF2892 0.29 -2.1 317,848 + GFF2892 0.29 -0.5 317,848 + GFF2892 0.29 +1.0 317,848 + GFF2892 0.29 -1.3 317,848 + GFF2892 0.29 +1.2 317,848 + GFF2892 0.29 +3.1 317,849 - GFF2892 0.30 -2.0 317,849 - GFF2892 0.30 -1.5 317,849 - GFF2892 0.30 +1.3 318,164 - GFF2892 0.56 +0.0 318,265 + GFF2892 0.65 -3.0 318,265 + GFF2892 0.65 +1.2 318,265 + GFF2892 0.65 -1.2 318,265 + GFF2892 0.65 -0.7 318,265 + GFF2892 0.65 -2.9 318,266 - GFF2892 0.65 -1.9 318,266 - GFF2892 0.65 +0.9 318,266 - GFF2892 0.65 +1.7 318,266 - GFF2892 0.65 +2.2
Or see this region's nucleotide sequence