Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2888 and GFF2889 overlap by 8 nucleotides GFF2889 and GFF2890 overlap by 4 nucleotides GFF2890 and GFF2891 are separated by 0 nucleotides
GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737
GFF2888
GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491
GFF2889
GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486
GFF2890
GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359
GFF2891
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 314.718 kb on - strand at 314.718 kb on - strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 315.041 kb on - strand, within GFF2889 at 315.603 kb on + strand, within GFF2890 at 315.603 kb on + strand, within GFF2890 at 315.604 kb on - strand, within GFF2890 at 315.673 kb on - strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.960 kb on + strand, within GFF2890 at 315.961 kb on - strand, within GFF2890 at 315.981 kb on + strand, within GFF2890 at 315.982 kb on - strand, within GFF2890 at 316.246 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890 at 316.555 kb on - strand at 316.555 kb on - strand at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.587 kb on + strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.588 kb on - strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.683 kb on + strand, within GFF2891 at 316.684 kb on - strand, within GFF2891 at 316.684 kb on - strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.692 kb on + strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.693 kb on - strand, within GFF2891 at 316.935 kb on + strand, within GFF2891 at 317.034 kb on + strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.035 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.107 kb on - strand, within GFF2891 at 317.119 kb on - strand, within GFF2891 at 317.119 kb on - strand, within GFF2891 at 317.226 kb on + strand, within GFF2891 at 317.226 kb on + strand, within GFF2891 at 317.227 kb on - strand, within GFF2891 at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.366 kb on + strand at 317.367 kb on - strand at 317.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 314,718 - -1.6 314,718 - -1.7 314,761 + +1.3 314,761 + -1.9 314,761 + -2.2 314,761 + -1.2 314,761 + +0.5 314,761 + +2.1 314,762 - -2.0 314,762 - +0.2 314,762 - +2.1 314,762 - -2.0 314,762 - +5.4 314,762 - -1.6 314,762 - +1.1 314,762 - -0.1 315,041 - GFF2889 0.41 -1.3 315,603 + GFF2890 0.12 +0.3 315,603 + GFF2890 0.12 -0.7 315,604 - GFF2890 0.12 +0.5 315,673 - GFF2890 0.19 +2.1 315,813 + GFF2890 0.33 -0.7 315,813 + GFF2890 0.33 +1.6 315,813 + GFF2890 0.33 -1.7 315,814 - GFF2890 0.33 -2.6 315,814 - GFF2890 0.33 +1.8 315,814 - GFF2890 0.33 +0.2 315,814 - GFF2890 0.33 -1.1 315,814 - GFF2890 0.33 -1.2 315,960 + GFF2890 0.47 -3.2 315,961 - GFF2890 0.47 -2.7 315,981 + GFF2890 0.49 -3.1 315,982 - GFF2890 0.49 +0.1 316,246 - GFF2890 0.76 -1.2 316,297 - GFF2890 0.81 -1.6 316,297 - GFF2890 0.81 -0.9 316,555 - +0.3 316,555 - -0.3 316,587 + GFF2891 0.11 -1.0 316,587 + GFF2891 0.11 +2.5 316,587 + GFF2891 0.11 -0.9 316,587 + GFF2891 0.11 -2.0 316,588 - GFF2891 0.12 -0.5 316,588 - GFF2891 0.12 +0.4 316,588 - GFF2891 0.12 +1.1 316,588 - GFF2891 0.12 -1.6 316,588 - GFF2891 0.12 +0.5 316,588 - GFF2891 0.12 -0.5 316,683 + GFF2891 0.22 +0.7 316,683 + GFF2891 0.22 -1.5 316,683 + GFF2891 0.22 -0.5 316,683 + GFF2891 0.22 -1.2 316,684 - GFF2891 0.23 -0.2 316,684 - GFF2891 0.23 +1.4 316,692 + GFF2891 0.23 -1.2 316,692 + GFF2891 0.23 +0.1 316,692 + GFF2891 0.23 +0.3 316,692 + GFF2891 0.23 -0.5 316,692 + GFF2891 0.23 -1.1 316,692 + GFF2891 0.23 -1.0 316,693 - GFF2891 0.24 -1.5 316,693 - GFF2891 0.24 -0.7 316,693 - GFF2891 0.24 -0.7 316,693 - GFF2891 0.24 -1.9 316,693 - GFF2891 0.24 -0.0 316,693 - GFF2891 0.24 +0.4 316,935 + GFF2891 0.51 +1.6 317,034 + GFF2891 0.63 +2.8 317,035 - GFF2891 0.63 -0.4 317,035 - GFF2891 0.63 +0.7 317,035 - GFF2891 0.63 +1.2 317,107 - GFF2891 0.71 -1.5 317,107 - GFF2891 0.71 +0.4 317,107 - GFF2891 0.71 -1.5 317,107 - GFF2891 0.71 -0.5 317,119 - GFF2891 0.72 -0.7 317,119 - GFF2891 0.72 -0.8 317,226 + GFF2891 0.85 -1.5 317,226 + GFF2891 0.85 +0.2 317,227 - GFF2891 0.85 -0.8 317,366 + +0.5 317,366 + -1.6 317,366 + -2.0 317,366 + -3.0 317,366 + +0.0 317,367 - +0.6 317,367 - +2.0
Or see this region's nucleotide sequence