Strain Fitness in Variovorax sp. SCN45 around GFF2823

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2821 and GFF2822 overlap by 4 nucleotidesGFF2822 and GFF2823 overlap by 4 nucleotidesGFF2823 and GFF2824 are separated by 37 nucleotides GFF2821 - Hemin ABC transporter, permease protein, at 247,704 to 248,738 GFF2821 GFF2822 - Periplasmic hemin-binding protein, at 248,735 to 249,634 GFF2822 GFF2823 - Hemin transport protein HmuS, at 249,631 to 250,731 GFF2823 GFF2824 - TonB-dependent hemin, ferrichrome receptor, at 250,769 to 252,982 GFF2824 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 248.647 kb on + strandat 248.647 kb on + strandat 248.647 kb on + strandat 248.647 kb on + strandat 248.647 kb on + strandat 248.647 kb on + strandat 248.647 kb on + strandat 248.648 kb on - strandat 248.648 kb on - strandat 248.648 kb on - strandat 248.648 kb on - strandat 249.019 kb on - strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.381 kb on + strand, within GFF2822at 249.382 kb on - strand, within GFF2822at 249.382 kb on - strand, within GFF2822at 249.382 kb on - strand, within GFF2822at 249.382 kb on - strand, within GFF2822at 249.418 kb on - strand, within GFF2822at 249.468 kb on + strand, within GFF2822at 249.468 kb on + strand, within GFF2822at 249.468 kb on + strand, within GFF2822at 249.468 kb on + strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.469 kb on - strand, within GFF2822at 249.584 kb on + strandat 249.584 kb on + strandat 249.584 kb on + strandat 249.584 kb on + strandat 249.584 kb on + strandat 249.585 kb on - strandat 249.585 kb on - strandat 249.585 kb on - strandat 249.585 kb on - strandat 249.585 kb on - strandat 250.478 kb on + strand, within GFF2823at 250.478 kb on + strand, within GFF2823at 250.478 kb on + strand, within GFF2823at 250.479 kb on - strand, within GFF2823at 250.818 kb on + strandat 250.818 kb on + strandat 250.818 kb on + strandat 250.819 kb on - strandat 250.819 kb on - strandat 250.876 kb on - strandat 250.876 kb on - strandat 251.076 kb on + strand, within GFF2824at 251.076 kb on + strand, within GFF2824at 251.076 kb on + strand, within GFF2824at 251.076 kb on + strand, within GFF2824at 251.077 kb on - strand, within GFF2824at 251.278 kb on + strand, within GFF2824at 251.278 kb on + strand, within GFF2824at 251.278 kb on + strand, within GFF2824at 251.279 kb on - strand, within GFF2824at 251.279 kb on - strand, within GFF2824at 251.331 kb on + strand, within GFF2824at 251.331 kb on + strand, within GFF2824at 251.331 kb on + strand, within GFF2824at 251.331 kb on + strand, within GFF2824at 251.332 kb on - strand, within GFF2824at 251.332 kb on - strand, within GFF2824at 251.332 kb on - strand, within GFF2824at 251.332 kb on - strand, within GFF2824at 251.332 kb on - strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.358 kb on + strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.359 kb on - strand, within GFF2824at 251.445 kb on + strand, within GFF2824at 251.445 kb on + strand, within GFF2824at 251.446 kb on - strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.514 kb on + strand, within GFF2824at 251.515 kb on - strand, within GFF2824at 251.515 kb on - strand, within GFF2824at 251.515 kb on - strand, within GFF2824at 251.515 kb on - strand, within GFF2824at 251.515 kb on - strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.523 kb on + strand, within GFF2824at 251.524 kb on - strand, within GFF2824at 251.524 kb on - strand, within GFF2824at 251.524 kb on - strand, within GFF2824at 251.524 kb on - strand, within GFF2824at 251.524 kb on - strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.700 kb on + strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824at 251.701 kb on - strand, within GFF2824

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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248,647 + -3.7
248,647 + -1.4
248,647 + -1.4
248,647 + +0.9
248,647 + -1.4
248,647 + +2.4
248,647 + -0.4
248,648 - -1.8
248,648 - +0.6
248,648 - -1.4
248,648 - -0.3
249,019 - GFF2822 0.32 +2.1
249,381 + GFF2822 0.72 +0.3
249,381 + GFF2822 0.72 -0.6
249,381 + GFF2822 0.72 -1.2
249,381 + GFF2822 0.72 +0.5
249,381 + GFF2822 0.72 +0.7
249,381 + GFF2822 0.72 -3.1
249,381 + GFF2822 0.72 -1.1
249,381 + GFF2822 0.72 -1.3
249,381 + GFF2822 0.72 +1.3
249,382 - GFF2822 0.72 -2.1
249,382 - GFF2822 0.72 -2.7
249,382 - GFF2822 0.72 +1.4
249,382 - GFF2822 0.72 -0.5
249,418 - GFF2822 0.76 -3.0
249,468 + GFF2822 0.81 +0.1
249,468 + GFF2822 0.81 +0.4
249,468 + GFF2822 0.81 +0.5
249,468 + GFF2822 0.81 +0.8
249,469 - GFF2822 0.82 -1.6
249,469 - GFF2822 0.82 +3.9
249,469 - GFF2822 0.82 -0.4
249,469 - GFF2822 0.82 +0.2
249,469 - GFF2822 0.82 -0.9
249,469 - GFF2822 0.82 +1.9
249,584 + -1.3
249,584 + -0.5
249,584 + +0.8
249,584 + -0.8
249,584 + -0.9
249,585 - -0.2
249,585 - +1.0
249,585 - -0.5
249,585 - -0.7
249,585 - -0.5
250,478 + GFF2823 0.77 -1.5
250,478 + GFF2823 0.77 -2.9
250,478 + GFF2823 0.77 -1.3
250,479 - GFF2823 0.77 -2.1
250,818 + -0.2
250,818 + +0.5
250,818 + -0.7
250,819 - -1.4
250,819 - +1.5
250,876 - -2.0
250,876 - +0.2
251,076 + GFF2824 0.14 +0.2
251,076 + GFF2824 0.14 -1.6
251,076 + GFF2824 0.14 -1.6
251,076 + GFF2824 0.14 +0.4
251,077 - GFF2824 0.14 -0.2
251,278 + GFF2824 0.23 -1.4
251,278 + GFF2824 0.23 +1.7
251,278 + GFF2824 0.23 +0.3
251,279 - GFF2824 0.23 -1.5
251,279 - GFF2824 0.23 -0.9
251,331 + GFF2824 0.25 +0.6
251,331 + GFF2824 0.25 +2.4
251,331 + GFF2824 0.25 -0.3
251,331 + GFF2824 0.25 -2.4
251,332 - GFF2824 0.25 +2.1
251,332 - GFF2824 0.25 -1.9
251,332 - GFF2824 0.25 -0.2
251,332 - GFF2824 0.25 -2.1
251,332 - GFF2824 0.25 -1.9
251,358 + GFF2824 0.27 +1.4
251,358 + GFF2824 0.27 -0.7
251,358 + GFF2824 0.27 +0.0
251,358 + GFF2824 0.27 +0.9
251,358 + GFF2824 0.27 -0.2
251,358 + GFF2824 0.27 +1.6
251,358 + GFF2824 0.27 +0.2
251,358 + GFF2824 0.27 -2.4
251,359 - GFF2824 0.27 +1.1
251,359 - GFF2824 0.27 +0.8
251,359 - GFF2824 0.27 +0.5
251,359 - GFF2824 0.27 -0.9
251,359 - GFF2824 0.27 +0.5
251,359 - GFF2824 0.27 -0.7
251,359 - GFF2824 0.27 -2.1
251,359 - GFF2824 0.27 +1.9
251,359 - GFF2824 0.27 -0.9
251,359 - GFF2824 0.27 +1.1
251,445 + GFF2824 0.31 +1.3
251,445 + GFF2824 0.31 -1.4
251,446 - GFF2824 0.31 -1.1
251,514 + GFF2824 0.34 -0.2
251,514 + GFF2824 0.34 -0.3
251,514 + GFF2824 0.34 +1.3
251,514 + GFF2824 0.34 +3.4
251,514 + GFF2824 0.34 +2.2
251,514 + GFF2824 0.34 -0.7
251,515 - GFF2824 0.34 +0.8
251,515 - GFF2824 0.34 -0.8
251,515 - GFF2824 0.34 +1.6
251,515 - GFF2824 0.34 -1.5
251,515 - GFF2824 0.34 +0.1
251,523 + GFF2824 0.34 -0.2
251,523 + GFF2824 0.34 +1.5
251,523 + GFF2824 0.34 -1.5
251,523 + GFF2824 0.34 +1.2
251,523 + GFF2824 0.34 -2.2
251,523 + GFF2824 0.34 -1.4
251,524 - GFF2824 0.34 -1.4
251,524 - GFF2824 0.34 +0.1
251,524 - GFF2824 0.34 -3.1
251,524 - GFF2824 0.34 -0.5
251,524 - GFF2824 0.34 -2.5
251,700 + GFF2824 0.42 -0.2
251,700 + GFF2824 0.42 +1.6
251,700 + GFF2824 0.42 -1.3
251,700 + GFF2824 0.42 -1.3
251,700 + GFF2824 0.42 +1.1
251,700 + GFF2824 0.42 +1.6
251,700 + GFF2824 0.42 -0.4
251,700 + GFF2824 0.42 -2.2
251,700 + GFF2824 0.42 +1.2
251,701 - GFF2824 0.42 +2.8
251,701 - GFF2824 0.42 -1.7
251,701 - GFF2824 0.42 -1.0
251,701 - GFF2824 0.42 -0.3
251,701 - GFF2824 0.42 -0.0
251,701 - GFF2824 0.42 +1.8
251,701 - GFF2824 0.42 -0.7
251,701 - GFF2824 0.42 -1.7
251,701 - GFF2824 0.42 -0.2

Or see this region's nucleotide sequence