Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2801 and GFF2802 overlap by 4 nucleotides GFF2802 and GFF2803 overlap by 4 nucleotides
GFF2801 - Homoserine dehydrogenase (EC 1.1.1.3), at 230,256 to 231,605
GFF2801
GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636
GFF2802
GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865
GFF2803
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 230.689 kb on + strand, within GFF2801 at 230.690 kb on - strand, within GFF2801 at 230.692 kb on + strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 230.693 kb on - strand, within GFF2801 at 231.332 kb on - strand, within GFF2801 at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.561 kb on + strand at 231.562 kb on - strand at 231.562 kb on - strand at 231.654 kb on + strand at 231.655 kb on - strand at 231.655 kb on - strand at 231.856 kb on - strand, within GFF2802 at 231.856 kb on - strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.838 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.926 kb on - strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.222 kb on + strand, within GFF2803 at 233.223 kb on - strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 230,689 + GFF2801 0.32 +2.1 230,690 - GFF2801 0.32 -0.2 230,692 + GFF2801 0.32 +0.1 230,693 - GFF2801 0.32 -1.6 230,693 - GFF2801 0.32 -0.9 230,693 - GFF2801 0.32 +0.1 230,693 - GFF2801 0.32 -0.9 230,693 - GFF2801 0.32 -1.2 231,332 - GFF2801 0.80 -3.6 231,561 + -2.0 231,561 + -2.1 231,561 + -2.7 231,561 + -2.0 231,561 + -1.0 231,562 - -2.3 231,562 - -1.3 231,654 + +0.5 231,655 - -0.7 231,655 - -0.1 231,856 - GFF2802 0.25 -0.0 231,856 - GFF2802 0.25 +0.5 231,894 + GFF2802 0.28 -1.2 231,894 + GFF2802 0.28 -0.2 231,894 + GFF2802 0.28 +1.1 231,894 + GFF2802 0.28 +4.3 231,894 + GFF2802 0.28 -0.9 231,894 + GFF2802 0.28 +0.1 231,894 + GFF2802 0.28 +0.1 231,894 + GFF2802 0.28 -1.7 231,894 + GFF2802 0.28 +0.0 231,895 - GFF2802 0.28 -0.0 231,895 - GFF2802 0.28 -0.6 231,895 - GFF2802 0.28 -0.3 231,895 - GFF2802 0.28 -0.1 231,895 - GFF2802 0.28 -0.8 231,895 - GFF2802 0.28 +0.1 231,895 - GFF2802 0.28 -0.2 231,895 - GFF2802 0.28 -1.4 231,895 - GFF2802 0.28 -2.9 231,895 - GFF2802 0.28 -0.6 231,895 - GFF2802 0.28 -0.6 231,900 + GFF2802 0.29 +1.1 231,900 + GFF2802 0.29 +0.5 231,900 + GFF2802 0.29 -0.5 231,900 + GFF2802 0.29 -1.9 231,901 - GFF2802 0.29 -1.1 231,901 - GFF2802 0.29 -0.1 231,901 - GFF2802 0.29 -0.4 231,901 - GFF2802 0.29 +0.6 231,901 - GFF2802 0.29 -2.6 231,901 - GFF2802 0.29 -1.6 231,901 - GFF2802 0.29 -0.2 231,901 - GFF2802 0.29 -2.4 231,901 - GFF2802 0.29 +1.6 232,459 + GFF2802 0.83 +0.5 232,459 + GFF2802 0.83 +0.1 232,460 - GFF2802 0.83 -1.1 232,460 - GFF2802 0.83 -1.8 232,460 - GFF2802 0.83 -2.0 232,460 - GFF2802 0.83 -0.4 232,460 - GFF2802 0.83 -1.6 232,460 - GFF2802 0.83 +1.2 232,460 - GFF2802 0.83 -2.8 232,838 + GFF2803 0.17 -0.5 232,868 + GFF2803 0.19 +0.1 232,868 + GFF2803 0.19 +0.6 232,868 + GFF2803 0.19 -1.7 232,868 + GFF2803 0.19 -1.5 232,868 + GFF2803 0.19 +1.1 232,868 + GFF2803 0.19 -0.7 232,868 + GFF2803 0.19 -1.1 232,869 - GFF2803 0.19 -0.2 232,869 - GFF2803 0.19 +3.3 232,869 - GFF2803 0.19 -1.4 232,869 - GFF2803 0.19 +1.8 232,926 - GFF2803 0.24 +0.3 233,075 + GFF2803 0.36 -0.7 233,075 + GFF2803 0.36 -0.7 233,075 + GFF2803 0.36 -1.2 233,075 + GFF2803 0.36 -2.4 233,075 + GFF2803 0.36 +1.6 233,076 - GFF2803 0.36 +1.1 233,076 - GFF2803 0.36 -1.1 233,142 - GFF2803 0.41 -1.1 233,142 - GFF2803 0.41 +0.1 233,142 - GFF2803 0.41 -1.6 233,222 + GFF2803 0.48 -0.9 233,223 - GFF2803 0.48 +2.1 233,237 + GFF2803 0.49 +2.1 233,237 + GFF2803 0.49 +2.8 233,313 - GFF2803 0.55 -1.5 233,313 - GFF2803 0.55 -1.2 233,430 - GFF2803 0.65 +2.1 233,430 - GFF2803 0.65 +0.1 233,430 - GFF2803 0.65 -0.2 233,571 - GFF2803 0.76 -1.6 233,571 - GFF2803 0.76 +0.6 233,571 - GFF2803 0.76 +0.1 233,571 - GFF2803 0.76 +3.4 233,571 - GFF2803 0.76 +1.1 233,571 - GFF2803 0.76 -0.5
Or see this region's nucleotide sequence