Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2746 and GFF2747 are separated by 76 nucleotides GFF2747 and GFF2748 are separated by 183 nucleotides GFF2748 and GFF2749 are separated by 2 nucleotides GFF2749 and GFF2750 overlap by 1 nucleotides
GFF2746 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 180,475 to 180,999
GFF2746
GFF2747 - 17 kDa surface antigen, at 181,076 to 181,576
GFF2747
GFF2748 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 181,760 to 182,206
GFF2748
GFF2749 - hypothetical protein, at 182,209 to 182,685
GFF2749
GFF2750 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 182,685 to 183,908
GFF2750
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 180.805 kb on + strand, within GFF2746 at 180.805 kb on + strand, within GFF2746 at 180.806 kb on - strand, within GFF2746 at 180.806 kb on - strand, within GFF2746 at 180.806 kb on - strand, within GFF2746 at 180.823 kb on + strand, within GFF2746 at 180.823 kb on + strand, within GFF2746 at 180.875 kb on + strand, within GFF2746 at 180.875 kb on + strand, within GFF2746 at 180.875 kb on + strand, within GFF2746 at 180.875 kb on + strand, within GFF2746 at 180.875 kb on + strand, within GFF2746 at 180.876 kb on - strand, within GFF2746 at 180.876 kb on - strand, within GFF2746 at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.077 kb on + strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.078 kb on - strand at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.194 kb on + strand, within GFF2747 at 181.195 kb on - strand, within GFF2747 at 181.203 kb on + strand, within GFF2747 at 181.204 kb on - strand, within GFF2747 at 181.204 kb on - strand, within GFF2747 at 181.343 kb on + strand, within GFF2747 at 181.344 kb on - strand, within GFF2747 at 181.417 kb on - strand, within GFF2747 at 181.425 kb on + strand, within GFF2747 at 181.425 kb on + strand, within GFF2747 at 181.426 kb on - strand, within GFF2747 at 181.426 kb on - strand, within GFF2747 at 181.440 kb on + strand, within GFF2747 at 181.489 kb on - strand, within GFF2747 at 181.725 kb on - strand at 182.210 kb on + strand at 182.211 kb on - strand at 182.211 kb on - strand at 182.211 kb on - strand at 182.211 kb on - strand at 182.211 kb on - strand at 182.633 kb on + strand, within GFF2749 at 182.633 kb on + strand, within GFF2749 at 182.633 kb on + strand, within GFF2749 at 182.633 kb on + strand, within GFF2749 at 182.633 kb on + strand, within GFF2749 at 182.633 kb on + strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.634 kb on - strand, within GFF2749 at 182.702 kb on + strand at 182.702 kb on + strand at 182.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 180,805 + GFF2746 0.63 -1.3 180,805 + GFF2746 0.63 +1.9 180,806 - GFF2746 0.63 -0.8 180,806 - GFF2746 0.63 -2.2 180,806 - GFF2746 0.63 -0.3 180,823 + GFF2746 0.66 -0.1 180,823 + GFF2746 0.66 -0.2 180,875 + GFF2746 0.76 -0.3 180,875 + GFF2746 0.76 +1.0 180,875 + GFF2746 0.76 -1.0 180,875 + GFF2746 0.76 -3.7 180,875 + GFF2746 0.76 +0.8 180,876 - GFF2746 0.76 +1.0 180,876 - GFF2746 0.76 +0.3 181,077 + -1.7 181,077 + -0.4 181,077 + -2.0 181,077 + -0.1 181,077 + +0.6 181,077 + -0.7 181,077 + +0.3 181,077 + +3.0 181,077 + +0.0 181,077 + -1.0 181,077 + -0.2 181,077 + +0.0 181,078 - -1.2 181,078 - -1.6 181,078 - -2.4 181,078 - -0.8 181,078 - +0.2 181,078 - +1.3 181,078 - -0.7 181,194 + GFF2747 0.24 +0.0 181,194 + GFF2747 0.24 -1.5 181,194 + GFF2747 0.24 +0.1 181,194 + GFF2747 0.24 -0.3 181,194 + GFF2747 0.24 -1.3 181,194 + GFF2747 0.24 -0.3 181,194 + GFF2747 0.24 +0.6 181,195 - GFF2747 0.24 -0.2 181,203 + GFF2747 0.25 -1.0 181,204 - GFF2747 0.26 +0.4 181,204 - GFF2747 0.26 +0.0 181,343 + GFF2747 0.53 +0.2 181,344 - GFF2747 0.53 +0.8 181,417 - GFF2747 0.68 +2.0 181,425 + GFF2747 0.70 -1.2 181,425 + GFF2747 0.70 +0.1 181,426 - GFF2747 0.70 -0.6 181,426 - GFF2747 0.70 +0.0 181,440 + GFF2747 0.73 -0.4 181,489 - GFF2747 0.82 +0.1 181,725 - -0.5 182,210 + +2.0 182,211 - -0.9 182,211 - +0.0 182,211 - -3.5 182,211 - -2.0 182,211 - +2.1 182,633 + GFF2749 0.89 +0.4 182,633 + GFF2749 0.89 +0.0 182,633 + GFF2749 0.89 +0.1 182,633 + GFF2749 0.89 +0.9 182,633 + GFF2749 0.89 -1.6 182,633 + GFF2749 0.89 -1.7 182,634 - GFF2749 0.89 -3.3 182,634 - GFF2749 0.89 -0.5 182,634 - GFF2749 0.89 +0.1 182,634 - GFF2749 0.89 +0.3 182,634 - GFF2749 0.89 +0.0 182,634 - GFF2749 0.89 -3.2 182,634 - GFF2749 0.89 -0.8 182,634 - GFF2749 0.89 +1.9 182,634 - GFF2749 0.89 +2.5 182,634 - GFF2749 0.89 +0.2 182,634 - GFF2749 0.89 -0.9 182,702 + +1.1 182,702 + -1.9 182,703 - -1.0
Or see this region's nucleotide sequence