Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2741 and GFF2742 are separated by 5 nucleotides GFF2742 and GFF2743 are separated by 91 nucleotides GFF2743 and GFF2744 are separated by 94 nucleotides GFF2744 and GFF2745 overlap by 4 nucleotides
GFF2741 - FIG002207: Probable transmembrane protein, at 176,456 to 177,547
GFF2741
GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329
GFF2742
GFF2743 - hypothetical protein, at 178,421 to 178,726
GFF2743
GFF2744 - FIG00932369: hypothetical protein, at 178,821 to 179,321
GFF2744
GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460
GFF2745
Position (kb) 177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 176.625 kb on - strand, within GFF2741 at 176.661 kb on - strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.324 kb on - strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.336 kb on - strand, within GFF2741 at 177.336 kb on - strand, within GFF2741 at 177.545 kb on + strand at 177.546 kb on - strand at 177.546 kb on - strand at 177.713 kb on + strand, within GFF2742 at 177.714 kb on - strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.359 kb on + strand at 178.359 kb on + strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.368 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.423 kb on - strand at 178.423 kb on - strand at 178.768 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.779 kb on - strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.823 kb on - strand at 178.823 kb on - strand at 178.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 176,625 - GFF2741 0.15 -0.8 176,661 - GFF2741 0.19 +2.0 177,323 + GFF2741 0.79 -0.3 177,323 + GFF2741 0.79 -1.0 177,323 + GFF2741 0.79 -0.1 177,323 + GFF2741 0.79 -1.5 177,324 - GFF2741 0.79 -3.0 177,335 + GFF2741 0.80 +0.0 177,335 + GFF2741 0.80 -0.8 177,335 + GFF2741 0.80 -0.8 177,336 - GFF2741 0.81 -1.7 177,336 - GFF2741 0.81 -0.9 177,545 + +1.5 177,546 - -1.6 177,546 - -3.0 177,713 + GFF2742 0.21 -1.8 177,714 - GFF2742 0.21 -2.3 177,989 + GFF2742 0.56 +0.1 177,989 + GFF2742 0.56 +1.8 177,989 + GFF2742 0.56 -0.6 177,990 - GFF2742 0.56 +0.4 177,990 - GFF2742 0.56 -0.8 178,088 - GFF2742 0.69 +0.3 178,088 - GFF2742 0.69 -1.7 178,123 + GFF2742 0.73 -0.3 178,123 + GFF2742 0.73 -2.2 178,123 + GFF2742 0.73 -1.0 178,124 - GFF2742 0.73 -0.2 178,124 - GFF2742 0.73 -2.1 178,124 - GFF2742 0.73 -1.3 178,124 - GFF2742 0.73 -1.9 178,124 - GFF2742 0.73 -1.2 178,124 - GFF2742 0.73 -2.0 178,124 - GFF2742 0.73 +2.4 178,124 - GFF2742 0.73 -1.2 178,124 - GFF2742 0.73 +0.6 178,359 + +1.0 178,359 + -3.4 178,360 - -3.7 178,360 - -1.8 178,360 - -2.7 178,360 - +2.0 178,368 + -0.5 178,422 + -3.4 178,422 + -1.3 178,422 + +0.4 178,422 + +2.4 178,422 + -2.1 178,422 + -0.3 178,423 - +0.5 178,423 - -0.5 178,768 + -0.6 178,778 + -2.4 178,778 + -0.9 178,778 + +2.4 178,779 - +1.0 178,790 + -1.8 178,790 + -2.6 178,790 + -1.6 178,790 + -0.2 178,790 + -3.6 178,790 + -0.7 178,790 + +1.9 178,791 - -0.8 178,791 - -0.3 178,791 - +0.5 178,791 - -1.3 178,791 - -2.7 178,791 - +2.0 178,822 + -1.9 178,822 + -1.6 178,822 + -2.1 178,822 + -3.3 178,822 + -0.4 178,822 + +0.1 178,822 + -3.3 178,822 + -4.5 178,823 - +0.1 178,823 - -0.8 178,823 - +0.5
Or see this region's nucleotide sequence