Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2729 and GFF2730 overlap by 1 nucleotides
GFF2729 - hypothetical protein, at 163,780 to 163,971
GFF2729
GFF2730 - DNA topoisomerase IV subunit A (EC 5.99.1.3), at 163,971 to 166,376
GFF2730
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 162.792 kb on + strand at 162.792 kb on + strand at 162.792 kb on + strand at 162.793 kb on - strand at 162.793 kb on - strand at 162.793 kb on - strand at 162.862 kb on - strand at 162.862 kb on - strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.871 kb on - strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.933 kb on + strand at 162.933 kb on + strand at 162.951 kb on + strand at 162.952 kb on - strand at 162.952 kb on - strand at 163.132 kb on + strand at 163.133 kb on - strand at 163.204 kb on + strand at 163.205 kb on - strand at 163.254 kb on + strand at 163.254 kb on + strand at 163.255 kb on - strand at 163.286 kb on + strand at 163.286 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.374 kb on + strand at 163.375 kb on - strand at 163.375 kb on - strand at 163.375 kb on - strand at 163.560 kb on + strand at 163.560 kb on + strand at 163.561 kb on - strand at 163.579 kb on + strand at 163.580 kb on - strand at 163.580 kb on - strand at 163.580 kb on - strand at 163.593 kb on + strand at 163.593 kb on + strand at 163.593 kb on + strand at 163.625 kb on + strand at 163.626 kb on - strand at 163.652 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.721 kb on + strand at 163.722 kb on - strand at 163.722 kb on - strand at 163.754 kb on + strand at 163.754 kb on + strand at 163.755 kb on - strand at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.907 kb on + strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 163.908 kb on - strand, within GFF2729 at 164.350 kb on - strand, within GFF2730 at 164.411 kb on - strand, within GFF2730 at 164.411 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730 at 164.660 kb on - strand, within GFF2730
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 162,792 + -1.2 162,792 + -2.2 162,792 + -3.4 162,793 - -0.1 162,793 - -1.4 162,793 - +6.0 162,862 - +0.8 162,862 - +1.2 162,870 + -2.0 162,870 + -1.0 162,870 + +1.0 162,870 + -2.9 162,870 + +1.8 162,870 + -0.3 162,870 + -0.6 162,871 - +1.0 162,871 - -1.3 162,871 - -0.2 162,871 - -1.0 162,871 - +1.5 162,871 - -2.3 162,871 - +1.0 162,871 - +0.2 162,871 - -0.6 162,918 + +2.7 162,918 + -1.0 162,918 + -0.9 162,918 + -0.2 162,919 - -1.2 162,919 - +2.0 162,933 + -0.3 162,933 + -3.4 162,951 + +0.9 162,952 - -2.4 162,952 - +0.0 163,132 + -1.2 163,133 - +0.5 163,204 + +0.9 163,205 - -1.2 163,254 + +1.0 163,254 + -2.0 163,255 - -2.2 163,286 + -1.3 163,286 + -2.0 163,374 + -3.1 163,374 + -1.7 163,374 + +0.7 163,374 + +2.1 163,374 + -0.8 163,375 - -1.8 163,375 - -1.4 163,375 - -2.4 163,560 + -0.4 163,560 + -3.0 163,561 - +0.4 163,579 + -1.3 163,580 - +2.0 163,580 - +2.0 163,580 - -1.3 163,593 + +1.7 163,593 + +0.9 163,593 + -0.3 163,625 + -1.5 163,626 - -0.8 163,652 + +0.5 163,721 + +0.0 163,721 + -3.7 163,721 + -1.9 163,721 + -0.7 163,722 - -0.6 163,722 - -0.4 163,754 + -2.5 163,754 + -0.1 163,755 - +0.6 163,907 + GFF2729 0.66 +1.1 163,907 + GFF2729 0.66 +0.4 163,907 + GFF2729 0.66 -1.6 163,907 + GFF2729 0.66 -2.0 163,907 + GFF2729 0.66 -0.9 163,907 + GFF2729 0.66 -2.6 163,907 + GFF2729 0.66 -1.2 163,907 + GFF2729 0.66 -2.2 163,907 + GFF2729 0.66 -0.4 163,907 + GFF2729 0.66 +1.1 163,907 + GFF2729 0.66 -1.7 163,907 + GFF2729 0.66 -0.2 163,907 + GFF2729 0.66 +0.2 163,907 + GFF2729 0.66 -1.4 163,907 + GFF2729 0.66 +0.4 163,907 + GFF2729 0.66 -1.0 163,908 - GFF2729 0.67 -1.2 163,908 - GFF2729 0.67 +1.0 163,908 - GFF2729 0.67 -2.4 163,908 - GFF2729 0.67 +1.7 163,908 - GFF2729 0.67 -0.1 163,908 - GFF2729 0.67 -2.2 163,908 - GFF2729 0.67 -2.8 163,908 - GFF2729 0.67 +0.6 163,908 - GFF2729 0.67 +0.4 163,908 - GFF2729 0.67 -0.3 163,908 - GFF2729 0.67 -0.6 163,908 - GFF2729 0.67 -1.1 163,908 - GFF2729 0.67 +2.0 163,908 - GFF2729 0.67 -3.0 163,908 - GFF2729 0.67 -1.2 163,908 - GFF2729 0.67 -1.2 163,908 - GFF2729 0.67 -2.1 163,908 - GFF2729 0.67 -2.4 163,908 - GFF2729 0.67 -0.3 163,908 - GFF2729 0.67 -0.7 164,350 - GFF2730 0.16 -0.6 164,411 - GFF2730 0.18 +2.0 164,411 - GFF2730 0.18 +1.0 164,660 - GFF2730 0.29 +0.0 164,660 - GFF2730 0.29 -0.3 164,660 - GFF2730 0.29 +1.0
Or see this region's nucleotide sequence