Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2715 and GFF2716 are separated by 5 nucleotides GFF2716 and GFF2717 are separated by 19 nucleotides GFF2717 and GFF2718 overlap by 1 nucleotides GFF2718 and GFF2719 are separated by 36 nucleotides
GFF2715 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 148,799 to 149,782
GFF2715
GFF2716 - 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45), at 149,788 to 150,741
GFF2716
GFF2717 - Epimerase KguE, at 150,761 to 151,510
GFF2717
GFF2718 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 151,510 to 152,265
GFF2718
GFF2719 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 152,302 to 153,099
GFF2719
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 150.023 kb on + strand, within GFF2716 at 150.023 kb on + strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.026 kb on + strand, within GFF2716 at 150.414 kb on - strand, within GFF2716 at 150.414 kb on - strand, within GFF2716 at 150.729 kb on + strand at 150.729 kb on + strand at 150.729 kb on + strand at 150.762 kb on + strand at 150.763 kb on - strand at 150.763 kb on - strand at 150.785 kb on + strand at 150.785 kb on + strand at 150.786 kb on - strand at 150.966 kb on + strand, within GFF2717 at 150.966 kb on + strand, within GFF2717 at 150.966 kb on + strand, within GFF2717 at 151.329 kb on + strand, within GFF2717 at 151.329 kb on + strand, within GFF2717 at 151.330 kb on - strand, within GFF2717 at 151.853 kb on + strand, within GFF2718 at 151.853 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 152.219 kb on + strand at 152.219 kb on + strand at 152.220 kb on - strand at 152.292 kb on - strand at 152.303 kb on + strand at 152.304 kb on - strand at 152.471 kb on + strand, within GFF2719
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 150,023 + GFF2716 0.25 +0.1 150,023 + GFF2716 0.25 -0.5 150,024 - GFF2716 0.25 +1.0 150,024 - GFF2716 0.25 +2.0 150,024 - GFF2716 0.25 -0.4 150,026 + GFF2716 0.25 -0.7 150,414 - GFF2716 0.66 -1.2 150,414 - GFF2716 0.66 -0.3 150,729 + +1.8 150,729 + -0.4 150,729 + +3.2 150,762 + +0.2 150,763 - -1.5 150,763 - +0.0 150,785 + -1.4 150,785 + +2.3 150,786 - +0.4 150,966 + GFF2717 0.27 +0.4 150,966 + GFF2717 0.27 -0.6 150,966 + GFF2717 0.27 -1.2 151,329 + GFF2717 0.76 -3.2 151,329 + GFF2717 0.76 -1.4 151,330 - GFF2717 0.76 -2.2 151,853 + GFF2718 0.45 -0.6 151,853 + GFF2718 0.45 +0.6 151,892 + GFF2718 0.51 -1.4 151,892 + GFF2718 0.51 +0.4 151,892 + GFF2718 0.51 +0.3 152,219 + -0.6 152,219 + -0.3 152,220 - -1.5 152,292 - -0.3 152,303 + -1.1 152,304 - -0.6 152,471 + GFF2719 0.21 -1.0
Or see this region's nucleotide sequence