Strain Fitness in Variovorax sp. SCN45 around GFF2706

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2705 and GFF2706 are separated by 530 nucleotidesGFF2706 and GFF2707 are separated by 12 nucleotides GFF2705 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 132,680 to 133,711 GFF2705 GFF2706 - VgrG protein, at 134,242 to 136,962 GFF2706 GFF2707 - hypothetical protein, at 136,975 to 138,846 GFF2707 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.335 kb on + strand, within GFF2705at 133.341 kb on + strand, within GFF2705at 133.341 kb on + strand, within GFF2705at 133.342 kb on - strand, within GFF2705at 133.342 kb on - strand, within GFF2705at 133.521 kb on + strand, within GFF2705at 133.522 kb on - strand, within GFF2705at 133.812 kb on + strandat 133.870 kb on - strandat 133.945 kb on - strandat 134.049 kb on + strandat 134.049 kb on + strandat 134.165 kb on + strandat 134.166 kb on - strandat 134.299 kb on + strandat 134.408 kb on - strandat 134.660 kb on - strand, within GFF2706at 134.698 kb on + strand, within GFF2706at 134.698 kb on + strand, within GFF2706at 134.699 kb on - strand, within GFF2706at 134.851 kb on - strand, within GFF2706at 134.851 kb on - strand, within GFF2706at 134.855 kb on - strand, within GFF2706at 134.977 kb on + strand, within GFF2706at 134.989 kb on + strand, within GFF2706at 135.035 kb on - strand, within GFF2706at 135.166 kb on + strand, within GFF2706at 135.167 kb on - strand, within GFF2706at 135.167 kb on - strand, within GFF2706at 135.167 kb on - strand, within GFF2706at 135.784 kb on - strand, within GFF2706at 135.915 kb on + strand, within GFF2706at 136.276 kb on + strand, within GFF2706at 136.276 kb on + strand, within GFF2706at 136.507 kb on + strand, within GFF2706at 136.508 kb on - strand, within GFF2706at 136.570 kb on + strand, within GFF2706at 136.571 kb on - strand, within GFF2706at 136.571 kb on - strand, within GFF2706at 136.571 kb on - strand, within GFF2706at 136.880 kb on - strandat 136.880 kb on - strandat 136.942 kb on + strandat 136.943 kb on - strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.005 kb on + strandat 137.006 kb on - strandat 137.006 kb on - strandat 137.006 kb on - strandat 137.006 kb on - strandat 137.006 kb on - strandat 137.006 kb on - strandat 137.132 kb on + strandat 137.132 kb on + strandat 137.133 kb on - strandat 137.133 kb on - strandat 137.133 kb on - strandat 137.158 kb on + strandat 137.159 kb on - strandat 137.202 kb on - strand, within GFF2707at 137.294 kb on - strand, within GFF2707at 137.326 kb on + strand, within GFF2707at 137.327 kb on - strand, within GFF2707at 137.327 kb on - strand, within GFF2707at 137.327 kb on - strand, within GFF2707at 137.327 kb on - strand, within GFF2707at 137.676 kb on + strand, within GFF2707at 137.676 kb on + strand, within GFF2707at 137.677 kb on - strand, within GFF2707at 137.677 kb on - strand, within GFF2707at 137.760 kb on + strand, within GFF2707at 137.761 kb on - strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.794 kb on + strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.795 kb on - strand, within GFF2707at 137.840 kb on - strand, within GFF2707at 137.894 kb on + strand, within GFF2707at 137.894 kb on + strand, within GFF2707at 137.894 kb on + strand, within GFF2707at 137.895 kb on - strand, within GFF2707at 137.895 kb on - strand, within GFF2707at 137.895 kb on - strand, within GFF2707at 137.896 kb on + strand, within GFF2707at 137.896 kb on + strand, within GFF2707at 137.896 kb on + strand, within GFF2707at 137.897 kb on - strand, within GFF2707at 137.897 kb on - strand, within GFF2707at 137.897 kb on - strand, within GFF2707at 137.913 kb on - strand, within GFF2707at 137.913 kb on - strand, within GFF2707

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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133,335 + GFF2705 0.63 -0.0
133,341 + GFF2705 0.64 -3.0
133,341 + GFF2705 0.64 -1.7
133,342 - GFF2705 0.64 +1.8
133,342 - GFF2705 0.64 +0.4
133,521 + GFF2705 0.81 +1.4
133,522 - GFF2705 0.82 -0.9
133,812 + +0.4
133,870 - -0.3
133,945 - -0.6
134,049 + +2.0
134,049 + -1.4
134,165 + -2.4
134,166 - +0.4
134,299 + -1.4
134,408 - -3.1
134,660 - GFF2706 0.15 -1.8
134,698 + GFF2706 0.17 +1.7
134,698 + GFF2706 0.17 -3.1
134,699 - GFF2706 0.17 +0.6
134,851 - GFF2706 0.22 -1.0
134,851 - GFF2706 0.22 +0.5
134,855 - GFF2706 0.23 -1.3
134,977 + GFF2706 0.27 +0.7
134,989 + GFF2706 0.27 -1.2
135,035 - GFF2706 0.29 +2.0
135,166 + GFF2706 0.34 +0.2
135,167 - GFF2706 0.34 -0.9
135,167 - GFF2706 0.34 -2.0
135,167 - GFF2706 0.34 -0.3
135,784 - GFF2706 0.57 +1.3
135,915 + GFF2706 0.61 -1.4
136,276 + GFF2706 0.75 -1.8
136,276 + GFF2706 0.75 +2.0
136,507 + GFF2706 0.83 +0.1
136,508 - GFF2706 0.83 +1.0
136,570 + GFF2706 0.86 +0.3
136,571 - GFF2706 0.86 +1.7
136,571 - GFF2706 0.86 +0.3
136,571 - GFF2706 0.86 -0.2
136,880 - -1.4
136,880 - +0.3
136,942 + -0.3
136,943 - +0.8
137,005 + -3.2
137,005 + +0.3
137,005 + +1.0
137,005 + +1.0
137,005 + +1.0
137,005 + +1.1
137,005 + -1.3
137,005 + -0.9
137,006 - -1.4
137,006 - +1.0
137,006 - +1.0
137,006 - -0.5
137,006 - -0.1
137,006 - -0.4
137,132 + -0.6
137,132 + -0.6
137,133 - +0.6
137,133 - -0.2
137,133 - -1.0
137,158 + -0.3
137,159 - -1.0
137,202 - GFF2707 0.12 -0.2
137,294 - GFF2707 0.17 +0.4
137,326 + GFF2707 0.19 +0.4
137,327 - GFF2707 0.19 +0.5
137,327 - GFF2707 0.19 -0.9
137,327 - GFF2707 0.19 -1.3
137,327 - GFF2707 0.19 -0.6
137,676 + GFF2707 0.37 +0.7
137,676 + GFF2707 0.37 +0.1
137,677 - GFF2707 0.38 -0.1
137,677 - GFF2707 0.38 -0.2
137,760 + GFF2707 0.42 -0.4
137,761 - GFF2707 0.42 -3.7
137,794 + GFF2707 0.44 +1.8
137,794 + GFF2707 0.44 +0.4
137,794 + GFF2707 0.44 -0.8
137,794 + GFF2707 0.44 -1.3
137,794 + GFF2707 0.44 -0.8
137,794 + GFF2707 0.44 +0.1
137,794 + GFF2707 0.44 -1.2
137,794 + GFF2707 0.44 +0.4
137,794 + GFF2707 0.44 -1.4
137,794 + GFF2707 0.44 +0.2
137,795 - GFF2707 0.44 -0.7
137,795 - GFF2707 0.44 +0.0
137,795 - GFF2707 0.44 -1.9
137,795 - GFF2707 0.44 +0.3
137,795 - GFF2707 0.44 -1.2
137,795 - GFF2707 0.44 +0.4
137,795 - GFF2707 0.44 -0.2
137,795 - GFF2707 0.44 +1.2
137,795 - GFF2707 0.44 -0.5
137,795 - GFF2707 0.44 -0.3
137,795 - GFF2707 0.44 +1.0
137,795 - GFF2707 0.44 -0.6
137,795 - GFF2707 0.44 -0.1
137,795 - GFF2707 0.44 -1.8
137,840 - GFF2707 0.46 +0.7
137,894 + GFF2707 0.49 -1.0
137,894 + GFF2707 0.49 -0.5
137,894 + GFF2707 0.49 -0.8
137,895 - GFF2707 0.49 -0.6
137,895 - GFF2707 0.49 +0.0
137,895 - GFF2707 0.49 -2.1
137,896 + GFF2707 0.49 +0.3
137,896 + GFF2707 0.49 +0.0
137,896 + GFF2707 0.49 -0.5
137,897 - GFF2707 0.49 -2.0
137,897 - GFF2707 0.49 -1.7
137,897 - GFF2707 0.49 +2.7
137,913 - GFF2707 0.50 -0.2
137,913 - GFF2707 0.50 +0.9

Or see this region's nucleotide sequence