Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2636 and GFF2637 overlap by 4 nucleotides GFF2637 and GFF2638 overlap by 4 nucleotides GFF2638 and GFF2639 are separated by 273 nucleotides
GFF2636 - hypothetical protein, at 48,940 to 50,802
GFF2636
GFF2637 - no description, at 50,799 to 51,251
GFF2637
GFF2638 - Putative 2-component regulator, at 51,248 to 52,372
GFF2638
GFF2639 - Ferrichrome-iron receptor, at 52,646 to 54,940
GFF2639
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.606 kb on + strand, within GFF2636 at 50.704 kb on + strand at 50.704 kb on + strand at 50.705 kb on - strand at 50.705 kb on - strand at 51.026 kb on - strand, within GFF2637 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 52.025 kb on + strand, within GFF2638 at 52.025 kb on + strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.158 kb on + strand, within GFF2638 at 52.159 kb on - strand, within GFF2638 at 52.159 kb on - strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.168 kb on - strand, within GFF2638 at 52.168 kb on - strand, within GFF2638 at 52.430 kb on - strand at 52.487 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.493 kb on + strand at 52.494 kb on - strand at 52.509 kb on + strand at 52.509 kb on + strand at 52.510 kb on - strand at 52.510 kb on - strand at 52.510 kb on - strand at 53.072 kb on + strand, within GFF2639 at 53.072 kb on + strand, within GFF2639 at 53.072 kb on + strand, within GFF2639 at 53.073 kb on - strand, within GFF2639 at 53.073 kb on - strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.106 kb on - strand, within GFF2639
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 50,606 + GFF2636 0.89 -2.3 50,704 + -1.8 50,704 + +0.1 50,705 - +0.7 50,705 - -1.7 51,026 - GFF2637 0.50 +0.0 51,550 - GFF2638 0.27 +0.0 51,550 - GFF2638 0.27 +0.9 51,550 - GFF2638 0.27 -0.6 51,550 - GFF2638 0.27 +0.9 52,025 + GFF2638 0.69 +1.1 52,025 + GFF2638 0.69 -1.0 52,026 - GFF2638 0.69 -2.3 52,026 - GFF2638 0.69 +0.6 52,026 - GFF2638 0.69 -1.3 52,026 - GFF2638 0.69 -3.0 52,158 + GFF2638 0.81 -0.4 52,159 - GFF2638 0.81 -0.0 52,159 - GFF2638 0.81 +1.4 52,167 + GFF2638 0.82 +1.6 52,167 + GFF2638 0.82 +0.4 52,167 + GFF2638 0.82 -1.2 52,168 - GFF2638 0.82 +1.0 52,168 - GFF2638 0.82 +2.9 52,430 - -0.3 52,487 + +1.0 52,488 + +0.3 52,488 + +0.7 52,488 + -1.3 52,488 + -1.2 52,488 + -0.3 52,488 + +1.7 52,489 - +2.0 52,489 - +0.1 52,489 - -3.3 52,489 - -0.7 52,489 - -0.6 52,489 - -1.9 52,489 - -0.2 52,489 - -0.1 52,493 + -0.2 52,494 - -3.7 52,509 + +0.6 52,509 + -2.0 52,510 - -2.4 52,510 - -2.2 52,510 - -0.1 53,072 + GFF2639 0.19 +2.2 53,072 + GFF2639 0.19 +0.4 53,072 + GFF2639 0.19 -0.5 53,073 - GFF2639 0.19 -1.4 53,073 - GFF2639 0.19 -0.4 53,102 + GFF2639 0.20 +1.7 53,102 + GFF2639 0.20 -0.9 53,102 + GFF2639 0.20 +0.0 53,103 - GFF2639 0.20 +0.4 53,103 - GFF2639 0.20 -2.8 53,103 - GFF2639 0.20 -0.6 53,106 - GFF2639 0.20 +0.8
Or see this region's nucleotide sequence