Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2614 and GFF2615 are separated by 4 nucleotides GFF2615 and GFF2616 are separated by 272 nucleotides GFF2616 and GFF2617 are separated by 10 nucleotides
GFF2614 - no description, at 19,908 to 20,075
GFF2614
GFF2615 - no description, at 20,080 to 20,259
GFF2615
GFF2616 - no description, at 20,532 to 21,017
GFF2616
GFF2617 - no description, at 21,028 to 21,192
GFF2617
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.915 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.017 kb on - strand at 19.017 kb on - strand at 19.044 kb on - strand at 19.058 kb on - strand at 19.063 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.112 kb on + strand at 19.112 kb on + strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.312 kb on + strand at 19.359 kb on - strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.423 kb on - strand at 19.423 kb on - strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.485 kb on + strand at 19.485 kb on + strand at 19.486 kb on - strand at 19.505 kb on + strand at 19.505 kb on + strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.509 kb on + strand at 19.509 kb on + strand at 19.510 kb on - strand at 19.510 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.625 kb on + strand at 19.625 kb on + strand at 19.626 kb on - strand at 19.626 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.799 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.806 kb on - strand at 19.806 kb on - strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.884 kb on + strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.926 kb on - strand, within GFF2614 at 19.942 kb on + strand, within GFF2614 at 19.943 kb on - strand, within GFF2614 at 20.062 kb on + strand at 20.073 kb on + strand at 20.073 kb on + strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.081 kb on + strand at 20.082 kb on - strand at 20.108 kb on + strand, within GFF2615 at 20.173 kb on - strand, within GFF2615 at 20.296 kb on - strand at 20.296 kb on - strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.443 kb on - strand at 20.524 kb on + strand at 20.533 kb on + strand at 20.593 kb on + strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.722 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.731 kb on + strand, within GFF2616 at 20.735 kb on + strand, within GFF2616 at 20.943 kb on + strand, within GFF2616 at 20.944 kb on - strand, within GFF2616 at 21.006 kb on - strand at 21.029 kb on + strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.048 kb on + strand, within GFF2617 at 21.048 kb on + strand, within GFF2617
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 18,915 - -0.6 18,960 - -0.2 18,960 - -0.6 18,960 - -3.7 18,960 - +1.3 19,016 + +0.0 19,016 + -0.2 19,016 + -0.3 19,017 - +0.2 19,017 - -0.1 19,044 - -0.1 19,058 - -2.5 19,063 + -3.3 19,105 + -0.6 19,105 + +0.0 19,105 + -1.6 19,106 - -0.4 19,106 - -0.7 19,106 - -0.6 19,112 + -0.9 19,112 + +0.4 19,113 - -0.2 19,113 - -0.3 19,113 - +0.8 19,113 - -1.4 19,139 + +0.8 19,139 + -0.2 19,312 + +0.4 19,359 - +0.1 19,393 + -1.3 19,393 + -1.8 19,393 + +1.1 19,393 + +0.8 19,394 - +2.0 19,394 - -2.2 19,394 - -1.0 19,394 - -1.0 19,422 + -0.3 19,422 + +0.2 19,422 + +0.9 19,423 - +0.8 19,423 - -1.2 19,462 + -0.3 19,462 + +1.0 19,462 + -2.3 19,462 + -0.4 19,462 + +1.2 19,462 + -3.4 19,463 - -0.6 19,463 - -1.4 19,463 - -0.8 19,463 - -1.6 19,463 - +0.1 19,464 + -1.6 19,464 + -1.4 19,464 + +0.8 19,464 + -1.0 19,465 - -1.4 19,465 - -0.7 19,465 - -2.5 19,465 - -0.3 19,485 + +0.4 19,485 + -0.2 19,486 - -0.2 19,505 + -0.6 19,505 + -1.7 19,506 - -0.8 19,506 - -1.6 19,506 - -0.8 19,506 - +1.4 19,509 + -0.6 19,509 + +0.0 19,510 - -1.0 19,510 - +1.5 19,614 - -0.5 19,614 - +0.4 19,614 - -0.0 19,622 + -0.6 19,622 + +1.0 19,622 + +2.7 19,622 + -1.4 19,622 + -1.3 19,622 + -1.9 19,622 + +0.2 19,622 + +0.4 19,622 + -0.3 19,622 + +0.1 19,622 + -2.3 19,622 + -1.6 19,623 - +0.4 19,623 - -0.7 19,623 - +0.0 19,623 - -0.8 19,623 - +1.0 19,623 - +1.6 19,623 - -1.8 19,623 - -0.3 19,623 - -1.6 19,623 - -0.7 19,623 - -2.8 19,625 + -2.9 19,625 + +0.0 19,626 - +0.0 19,626 - +1.0 19,641 - +0.3 19,641 - +1.5 19,641 - +0.2 19,641 - -1.1 19,641 - -1.4 19,641 - +0.4 19,641 - +2.0 19,668 - -1.9 19,668 - -1.8 19,668 - -0.2 19,668 - -1.7 19,754 + +1.6 19,754 + +2.8 19,754 + -0.6 19,754 + +0.4 19,754 + +0.5 19,754 + +1.3 19,754 + +1.8 19,754 + -1.2 19,754 + +0.6 19,754 + +0.0 19,754 + -1.1 19,754 + -0.1 19,754 + +0.1 19,754 + -0.8 19,754 + -1.4 19,798 + +1.3 19,798 + -1.4 19,798 + -2.8 19,799 - -0.6 19,805 + +0.5 19,805 + +1.0 19,806 - +0.1 19,806 - +0.3 19,825 + -0.6 19,825 + +0.6 19,825 + -0.3 19,825 + +1.2 19,825 + -1.3 19,825 + +0.0 19,825 + +1.9 19,825 + -0.3 19,825 + +0.4 19,825 + -1.0 19,825 + -0.5 19,826 - -0.5 19,826 - +2.0 19,826 - -1.8 19,884 + +0.8 19,885 - +0.2 19,885 - -0.8 19,885 - -0.5 19,885 - +1.7 19,891 + -1.7 19,891 + -0.4 19,891 + -3.2 19,891 + -0.5 19,891 + -2.6 19,891 + -0.8 19,891 + +1.7 19,891 + +2.0 19,891 + -0.3 19,891 + +0.5 19,891 + -0.8 19,891 + -0.8 19,891 + -0.4 19,891 + -0.3 19,891 + -0.6 19,891 + -1.9 19,891 + -1.0 19,892 - -3.8 19,892 - +0.1 19,892 - -1.0 19,892 - -0.6 19,892 - -1.0 19,892 - -0.8 19,892 - -1.4 19,892 - +1.5 19,906 + +0.5 19,906 + -1.4 19,906 + -1.3 19,907 - -1.0 19,907 - -1.2 19,907 - +1.1 19,907 - -0.9 19,907 - +1.0 19,907 - -0.9 19,907 - -0.7 19,926 - GFF2614 0.11 -1.2 19,942 + GFF2614 0.20 +0.7 19,943 - GFF2614 0.21 -0.1 20,062 + -1.7 20,073 + -3.1 20,073 + -0.6 20,074 - -1.0 20,074 - +0.0 20,074 - -1.3 20,074 - +0.1 20,081 + -0.3 20,082 - -1.9 20,108 + GFF2615 0.16 -1.2 20,173 - GFF2615 0.52 -1.2 20,296 - -1.0 20,296 - -0.3 20,411 + -1.2 20,411 + +1.7 20,411 + +0.3 20,443 - +0.1 20,524 + -1.5 20,533 + -1.3 20,593 + GFF2616 0.13 +0.9 20,594 - GFF2616 0.13 -0.7 20,594 - GFF2616 0.13 +0.4 20,722 + GFF2616 0.39 -0.7 20,729 + GFF2616 0.41 -2.6 20,729 + GFF2616 0.41 -1.0 20,730 - GFF2616 0.41 +1.1 20,730 - GFF2616 0.41 -1.7 20,731 + GFF2616 0.41 +0.4 20,735 + GFF2616 0.42 -1.0 20,943 + GFF2616 0.85 -1.2 20,944 - GFF2616 0.85 +1.3 21,006 - +0.3 21,029 + -0.2 21,030 - +1.6 21,030 - -1.4 21,030 - -0.8 21,048 + GFF2617 0.12 -0.6 21,048 + GFF2617 0.12 -0.6
Or see this region's nucleotide sequence