Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2541 and GFF2542 are separated by 113 nucleotides GFF2542 and GFF2543 are separated by 32 nucleotides GFF2543 and GFF2544 are separated by 131 nucleotides GFF2544 and GFF2545 overlap by 4 nucleotides
GFF2541 - FIG00899427: hypothetical protein, at 604,755 to 605,168
GFF2541
GFF2542 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase (EC 2.1.1.201), at 605,282 to 606,013
GFF2542
GFF2543 - Uncharacterized membrane protein Bcep18194_A6058, at 606,046 to 607,077
GFF2543
GFF2544 - Ubiquinone biosynthesis protein UbiJ, at 607,209 to 607,778
GFF2544
GFF2545 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 607,775 to 609,340
GFF2545
Position (kb) 606
607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 605.046 kb on + strand, within GFF2541 at 605.046 kb on + strand, within GFF2541 at 605.046 kb on + strand, within GFF2541 at 605.047 kb on - strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.085 kb on + strand, within GFF2541 at 605.086 kb on - strand, within GFF2541 at 605.086 kb on - strand, within GFF2541 at 605.086 kb on - strand, within GFF2541 at 605.185 kb on + strand at 605.185 kb on + strand at 605.186 kb on - strand at 605.186 kb on - strand at 605.269 kb on + strand at 605.270 kb on - strand at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.080 kb on + strand at 607.080 kb on + strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.188 kb on - strand at 607.199 kb on - strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.209 kb on - strand at 607.209 kb on - strand at 607.209 kb on - strand at 607.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 605,046 + GFF2541 0.70 -0.1 605,046 + GFF2541 0.70 -2.1 605,046 + GFF2541 0.70 -0.0 605,047 - GFF2541 0.71 -2.2 605,085 + GFF2541 0.80 -0.1 605,085 + GFF2541 0.80 +1.4 605,085 + GFF2541 0.80 -0.4 605,085 + GFF2541 0.80 -0.2 605,085 + GFF2541 0.80 -2.4 605,085 + GFF2541 0.80 -1.4 605,085 + GFF2541 0.80 -1.4 605,085 + GFF2541 0.80 -2.7 605,086 - GFF2541 0.80 +0.7 605,086 - GFF2541 0.80 +0.1 605,086 - GFF2541 0.80 +2.9 605,185 + -2.3 605,185 + +0.4 605,186 - -1.1 605,186 - -1.5 605,269 + -1.7 605,270 - -0.7 606,520 + GFF2543 0.46 -1.3 606,520 + GFF2543 0.46 -2.8 606,520 + GFF2543 0.46 -2.8 606,520 + GFF2543 0.46 +0.2 606,520 + GFF2543 0.46 -0.6 606,520 + GFF2543 0.46 -1.2 606,520 + GFF2543 0.46 -1.1 606,521 - GFF2543 0.46 -1.4 606,521 - GFF2543 0.46 -1.3 606,521 - GFF2543 0.46 -2.7 606,521 - GFF2543 0.46 -2.8 606,521 - GFF2543 0.46 -1.5 606,521 - GFF2543 0.46 -1.4 606,521 - GFF2543 0.46 -1.1 606,934 + GFF2543 0.86 -1.6 606,934 + GFF2543 0.86 -0.9 606,934 + GFF2543 0.86 +0.4 606,934 + GFF2543 0.86 -0.9 606,934 + GFF2543 0.86 -2.6 606,934 + GFF2543 0.86 -1.8 606,934 + GFF2543 0.86 -2.2 606,934 + GFF2543 0.86 -1.1 606,934 + GFF2543 0.86 -3.2 606,934 + GFF2543 0.86 -2.4 606,935 - GFF2543 0.86 -1.9 606,935 - GFF2543 0.86 -0.4 606,935 - GFF2543 0.86 -4.4 606,935 - GFF2543 0.86 +0.9 606,935 - GFF2543 0.86 -1.8 606,935 - GFF2543 0.86 -0.9 606,935 - GFF2543 0.86 -0.3 606,935 - GFF2543 0.86 -2.1 606,935 - GFF2543 0.86 -1.8 606,935 - GFF2543 0.86 -0.9 606,935 - GFF2543 0.86 -0.9 606,935 - GFF2543 0.86 -1.5 607,075 + +0.7 607,075 + -2.1 607,075 + +1.9 607,075 + -1.3 607,075 + -0.3 607,076 - -0.2 607,076 - -0.1 607,076 - -0.2 607,076 - -1.3 607,076 - -0.2 607,076 - +0.9 607,076 - +1.9 607,076 - +0.8 607,076 - +0.7 607,076 - +0.7 607,080 + -0.5 607,080 + -0.8 607,081 - -1.6 607,081 - -0.6 607,081 - -1.7 607,081 - -1.0 607,081 - +1.5 607,081 - +1.4 607,081 - +0.6 607,081 - -0.6 607,081 - +0.4 607,188 - +0.1 607,199 - -0.6 607,208 + -3.3 607,208 + +0.1 607,208 + -2.8 607,208 + -0.5 607,208 + -2.9 607,208 + +0.7 607,208 + -2.3 607,208 + -1.3 607,208 + -0.4 607,208 + -1.1 607,209 - +1.4 607,209 - +0.8 607,209 - +0.8 607,787 + -0.2
Or see this region's nucleotide sequence