Strain Fitness in Variovorax sp. SCN45 around GFF252

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF251 and GFF252 are separated by 22 nucleotidesGFF252 and GFF253 are separated by 84 nucleotides GFF251 - hypothetical protein, at 282,703 to 283,704 GFF251 GFF252 - Zinc-type alcohol dehydrogenase-like protein, at 283,727 to 284,743 GFF252 GFF253 - Transcriptional regulator, LysR family, at 284,828 to 285,727 GFF253 Position (kb) 283 284 285Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.976 kb on - strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.189 kb on + strand, within GFF251at 283.190 kb on - strand, within GFF251at 283.190 kb on - strand, within GFF251at 283.309 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.313 kb on - strand, within GFF251at 283.330 kb on + strand, within GFF251at 283.330 kb on + strand, within GFF251at 283.331 kb on - strand, within GFF251at 283.331 kb on - strand, within GFF251at 283.428 kb on - strand, within GFF251at 283.428 kb on - strand, within GFF251at 283.651 kb on + strandat 283.651 kb on + strandat 283.651 kb on + strandat 283.949 kb on - strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.951 kb on - strand, within GFF252at 284.025 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.081 kb on - strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.145 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.816 kb on - strandat 284.837 kb on + strandat 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.326 kb on + strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.327 kb on - strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.359 kb on + strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.360 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.369 kb on - strand, within GFF253at 285.653 kb on + strandat 285.654 kb on - strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.708 kb on + strandat 285.709 kb on - strandat 285.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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282,856 + GFF251 0.15 -0.8
282,856 + GFF251 0.15 -0.8
282,856 + GFF251 0.15 +1.6
282,856 + GFF251 0.15 +1.8
282,856 + GFF251 0.15 +1.0
282,857 - GFF251 0.15 -2.9
282,857 - GFF251 0.15 -3.2
282,857 - GFF251 0.15 -0.8
282,857 - GFF251 0.15 -0.5
282,865 + GFF251 0.16 -1.9
282,865 + GFF251 0.16 -0.5
282,865 + GFF251 0.16 -2.2
282,865 + GFF251 0.16 -0.8
282,865 + GFF251 0.16 +1.8
282,865 + GFF251 0.16 +1.7
282,865 + GFF251 0.16 -0.3
282,865 + GFF251 0.16 -1.0
282,866 - GFF251 0.16 +1.1
282,866 - GFF251 0.16 -1.6
282,866 - GFF251 0.16 -0.2
282,866 - GFF251 0.16 -1.9
282,919 + GFF251 0.22 -1.3
282,919 + GFF251 0.22 +0.3
282,919 + GFF251 0.22 +0.2
282,920 - GFF251 0.22 +0.1
282,920 - GFF251 0.22 +1.8
282,920 - GFF251 0.22 +0.2
282,920 - GFF251 0.22 -1.1
282,920 - GFF251 0.22 +0.5
282,976 - GFF251 0.27 +0.9
283,126 + GFF251 0.42 -1.6
283,126 + GFF251 0.42 -1.0
283,126 + GFF251 0.42 -1.2
283,126 + GFF251 0.42 +0.7
283,127 - GFF251 0.42 -1.3
283,127 - GFF251 0.42 +0.0
283,127 - GFF251 0.42 +0.2
283,127 - GFF251 0.42 -2.2
283,144 + GFF251 0.44 +1.8
283,144 + GFF251 0.44 -0.2
283,144 + GFF251 0.44 -0.2
283,144 + GFF251 0.44 -1.7
283,145 - GFF251 0.44 -1.0
283,145 - GFF251 0.44 -1.0
283,145 - GFF251 0.44 -2.1
283,145 - GFF251 0.44 +0.7
283,189 + GFF251 0.49 -0.4
283,190 - GFF251 0.49 +1.2
283,190 - GFF251 0.49 +0.8
283,309 + GFF251 0.60 +0.6
283,312 + GFF251 0.61 +1.8
283,312 + GFF251 0.61 +1.1
283,312 + GFF251 0.61 -2.1
283,312 + GFF251 0.61 -0.6
283,312 + GFF251 0.61 -3.6
283,313 - GFF251 0.61 -0.4
283,330 + GFF251 0.63 -0.2
283,330 + GFF251 0.63 +1.0
283,331 - GFF251 0.63 +0.9
283,331 - GFF251 0.63 +1.0
283,428 - GFF251 0.72 +0.2
283,428 - GFF251 0.72 +1.0
283,651 + -0.4
283,651 + -1.3
283,651 + -2.2
283,949 - GFF252 0.22 +0.2
283,950 + GFF252 0.22 -2.5
283,950 + GFF252 0.22 -1.8
283,950 + GFF252 0.22 -1.7
283,950 + GFF252 0.22 -0.8
283,951 - GFF252 0.22 +1.1
284,025 + GFF252 0.29 +2.6
284,079 + GFF252 0.35 +0.5
284,079 + GFF252 0.35 -1.6
284,079 + GFF252 0.35 -0.7
284,079 + GFF252 0.35 -0.6
284,079 + GFF252 0.35 -2.6
284,079 + GFF252 0.35 +1.4
284,079 + GFF252 0.35 -0.6
284,079 + GFF252 0.35 -1.9
284,080 - GFF252 0.35 +0.2
284,080 - GFF252 0.35 -1.3
284,080 - GFF252 0.35 -1.0
284,080 - GFF252 0.35 -1.8
284,080 - GFF252 0.35 +0.6
284,081 - GFF252 0.35 -0.2
284,121 + GFF252 0.39 -0.1
284,121 + GFF252 0.39 +0.6
284,121 + GFF252 0.39 +1.1
284,121 + GFF252 0.39 -2.4
284,122 - GFF252 0.39 +2.0
284,122 - GFF252 0.39 -3.8
284,122 - GFF252 0.39 -0.8
284,122 - GFF252 0.39 -1.0
284,122 - GFF252 0.39 +1.0
284,122 - GFF252 0.39 -3.3
284,145 + GFF252 0.41 -1.9
284,421 + GFF252 0.68 -1.9
284,421 + GFF252 0.68 -1.3
284,421 + GFF252 0.68 -0.7
284,422 - GFF252 0.68 -1.4
284,422 - GFF252 0.68 -2.2
284,422 - GFF252 0.68 -0.2
284,469 + GFF252 0.73 -1.6
284,469 + GFF252 0.73 -4.0
284,470 - GFF252 0.73 +0.1
284,470 - GFF252 0.73 +1.1
284,470 - GFF252 0.73 +3.4
284,470 - GFF252 0.73 -1.2
284,470 - GFF252 0.73 -0.3
284,470 - GFF252 0.73 +0.2
284,816 - +1.1
284,837 + -2.3
285,326 + GFF253 0.55 -1.6
285,326 + GFF253 0.55 -1.9
285,326 + GFF253 0.55 -2.2
285,326 + GFF253 0.55 -1.6
285,326 + GFF253 0.55 -0.7
285,326 + GFF253 0.55 +1.0
285,326 + GFF253 0.55 +0.4
285,326 + GFF253 0.55 +1.3
285,326 + GFF253 0.55 +1.3
285,326 + GFF253 0.55 +1.2
285,326 + GFF253 0.55 -0.4
285,326 + GFF253 0.55 +1.8
285,327 - GFF253 0.55 +1.0
285,327 - GFF253 0.55 -1.5
285,327 - GFF253 0.55 +1.3
285,327 - GFF253 0.55 -0.3
285,327 - GFF253 0.55 +1.2
285,327 - GFF253 0.55 -0.7
285,327 - GFF253 0.55 -0.5
285,327 - GFF253 0.55 +1.2
285,327 - GFF253 0.55 -0.8
285,327 - GFF253 0.55 -0.9
285,359 + GFF253 0.59 -1.8
285,359 + GFF253 0.59 -0.1
285,359 + GFF253 0.59 -0.2
285,359 + GFF253 0.59 -2.3
285,360 - GFF253 0.59 +0.9
285,360 - GFF253 0.59 +1.5
285,360 - GFF253 0.59 +0.7
285,360 - GFF253 0.59 +0.7
285,360 - GFF253 0.59 -0.2
285,369 - GFF253 0.60 +0.2
285,369 - GFF253 0.60 -0.8
285,369 - GFF253 0.60 -2.6
285,369 - GFF253 0.60 +0.3
285,369 - GFF253 0.60 -1.8
285,653 + -0.5
285,654 - -1.5
285,708 + -0.3
285,708 + -0.9
285,708 + +0.3
285,708 + -1.0
285,708 + -0.2
285,708 + +1.8
285,709 - +0.6
285,709 - +0.6

Or see this region's nucleotide sequence