Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2481 and GFF2482 are separated by 12 nucleotides GFF2482 and GFF2483 are separated by 91 nucleotides GFF2483 and GFF2484 overlap by 1 nucleotides GFF2484 and GFF2485 are separated by 13 nucleotides GFF2485 and GFF2486 are separated by 25 nucleotides
GFF2481 - Urease accessory protein UreF, at 538,962 to 539,630
GFF2481
GFF2482 - Urease accessory protein UreE, at 539,643 to 540,257
GFF2482
GFF2483 - Urease alpha subunit (EC 3.5.1.5), at 540,349 to 542,067
GFF2483
GFF2484 - Urease beta subunit (EC 3.5.1.5), at 542,067 to 542,372
GFF2484
GFF2485 - Nickel-binding accessory protein UreJ-HupE, at 542,386 to 542,985
GFF2485
GFF2486 - Urease gamma subunit (EC 3.5.1.5), at 543,011 to 543,313
GFF2486
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.560 kb on + strand, within GFF2481 at 539.959 kb on + strand, within GFF2482 at 539.960 kb on - strand, within GFF2482 at 540.303 kb on + strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.362 kb on + strand at 540.363 kb on - strand at 540.464 kb on + strand at 540.464 kb on + strand at 540.465 kb on - strand at 540.833 kb on + strand, within GFF2483 at 540.833 kb on + strand, within GFF2483 at 540.834 kb on - strand, within GFF2483 at 540.834 kb on - strand, within GFF2483 at 540.834 kb on - strand, within GFF2483 at 540.846 kb on - strand, within GFF2483 at 541.142 kb on + strand, within GFF2483 at 541.142 kb on + strand, within GFF2483 at 541.142 kb on + strand, within GFF2483 at 541.143 kb on - strand, within GFF2483 at 541.143 kb on - strand, within GFF2483 at 541.941 kb on - strand at 541.961 kb on + strand at 541.961 kb on + strand at 542.005 kb on + strand at 542.043 kb on - strand at 542.255 kb on - strand, within GFF2484 at 542.255 kb on - strand, within GFF2484
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 539,560 + GFF2481 0.89 +0.3 539,959 + GFF2482 0.51 -0.2 539,960 - GFF2482 0.52 -1.2 540,303 + +0.6 540,304 - +1.0 540,304 - +0.7 540,304 - -2.0 540,304 - +0.6 540,362 + +0.4 540,363 - -2.7 540,464 + -0.6 540,464 + -2.9 540,465 - +0.4 540,833 + GFF2483 0.28 -0.5 540,833 + GFF2483 0.28 -1.6 540,834 - GFF2483 0.28 -0.4 540,834 - GFF2483 0.28 -1.8 540,834 - GFF2483 0.28 +0.3 540,846 - GFF2483 0.29 -1.7 541,142 + GFF2483 0.46 -0.7 541,142 + GFF2483 0.46 +0.5 541,142 + GFF2483 0.46 +0.1 541,143 - GFF2483 0.46 -1.2 541,143 - GFF2483 0.46 -2.5 541,941 - +2.0 541,961 + +0.7 541,961 + -0.2 542,005 + +0.8 542,043 - -0.3 542,255 - GFF2484 0.61 -1.0 542,255 - GFF2484 0.61 -0.8
Or see this region's nucleotide sequence