Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2433 and GFF2434 are separated by 81 nucleotides GFF2434 and GFF2435 overlap by 4 nucleotides GFF2435 and GFF2436 overlap by 4 nucleotides GFF2436 and GFF2437 are separated by 48 nucleotides
GFF2433 - Putative OMR family iron-siderophore receptor precursor, at 482,760 to 485,210
GFF2433
GFF2434 - no description, at 485,292 to 485,588
GFF2434
GFF2435 - FIG138928: iron-regulated membrane protein, at 485,585 to 487,261
GFF2435
GFF2436 - no description, at 487,258 to 487,620
GFF2436
GFF2437 - hypothetical protein, at 487,669 to 488,322
GFF2437
Position (kb) 485
486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 484.599 kb on + strand, within GFF2433 at 484.599 kb on + strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.600 kb on - strand, within GFF2433 at 484.626 kb on + strand, within GFF2433 at 484.626 kb on + strand, within GFF2433 at 484.627 kb on - strand, within GFF2433 at 484.628 kb on - strand, within GFF2433 at 484.670 kb on + strand, within GFF2433 at 484.670 kb on + strand, within GFF2433 at 484.708 kb on + strand, within GFF2433 at 484.758 kb on + strand, within GFF2433 at 484.758 kb on + strand, within GFF2433 at 484.759 kb on - strand, within GFF2433 at 484.759 kb on - strand, within GFF2433 at 484.761 kb on + strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.762 kb on - strand, within GFF2433 at 484.929 kb on + strand, within GFF2433 at 484.930 kb on - strand, within GFF2433 at 484.995 kb on + strand at 484.995 kb on + strand at 484.995 kb on + strand at 484.996 kb on - strand at 484.996 kb on - strand at 484.998 kb on + strand at 484.998 kb on + strand at 485.004 kb on + strand at 485.005 kb on - strand at 485.134 kb on - strand at 485.134 kb on - strand at 485.134 kb on - strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.160 kb on + strand at 485.160 kb on + strand at 485.160 kb on + strand at 485.161 kb on - strand at 485.164 kb on - strand at 485.199 kb on + strand at 485.199 kb on + strand at 485.199 kb on + strand at 485.200 kb on - strand at 485.200 kb on - strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.249 kb on + strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.250 kb on - strand at 485.638 kb on + strand at 485.638 kb on + strand at 485.638 kb on + strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.639 kb on - strand at 485.843 kb on + strand, within GFF2435 at 485.843 kb on + strand, within GFF2435 at 485.843 kb on + strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.844 kb on - strand, within GFF2435 at 485.924 kb on + strand, within GFF2435 at 485.924 kb on + strand, within GFF2435 at 485.925 kb on - strand, within GFF2435 at 485.948 kb on + strand, within GFF2435 at 485.948 kb on + strand, within GFF2435 at 486.062 kb on + strand, within GFF2435 at 486.062 kb on + strand, within GFF2435 at 486.269 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.522 kb on - strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 487.270 kb on + strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.300 kb on + strand, within GFF2436 at 487.300 kb on + strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.529 kb on - strand, within GFF2436 at 487.753 kb on + strand, within GFF2437 at 487.753 kb on + strand, within GFF2437 at 487.754 kb on - strand, within GFF2437 at 487.987 kb on + strand, within GFF2437 at 487.988 kb on - strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.201 kb on - strand, within GFF2437 at 488.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 484,599 + GFF2433 0.75 +0.8 484,599 + GFF2433 0.75 -2.6 484,600 - GFF2433 0.75 +0.4 484,600 - GFF2433 0.75 -0.4 484,600 - GFF2433 0.75 -0.2 484,626 + GFF2433 0.76 +3.5 484,626 + GFF2433 0.76 +0.4 484,627 - GFF2433 0.76 +0.4 484,628 - GFF2433 0.76 -2.1 484,670 + GFF2433 0.78 -0.2 484,670 + GFF2433 0.78 -0.4 484,708 + GFF2433 0.79 -2.8 484,758 + GFF2433 0.82 -0.2 484,758 + GFF2433 0.82 -0.3 484,759 - GFF2433 0.82 +1.7 484,759 - GFF2433 0.82 -0.3 484,761 + GFF2433 0.82 -1.5 484,762 - GFF2433 0.82 +0.3 484,762 - GFF2433 0.82 +0.7 484,762 - GFF2433 0.82 -0.8 484,762 - GFF2433 0.82 -1.2 484,929 + GFF2433 0.88 +0.6 484,930 - GFF2433 0.89 +1.6 484,995 + +0.7 484,995 + +0.7 484,995 + +0.7 484,996 - -1.3 484,996 - +2.1 484,998 + +1.8 484,998 + -0.4 485,004 + -1.7 485,005 - -1.1 485,134 - +0.4 485,134 - -0.7 485,134 - +0.6 485,136 + -0.4 485,136 + -2.4 485,136 + +0.2 485,160 + -0.8 485,160 + +1.4 485,160 + +1.7 485,161 - -1.0 485,164 - -0.9 485,199 + +0.1 485,199 + -0.8 485,199 + +2.4 485,200 - -1.6 485,200 - -1.2 485,249 + -0.8 485,249 + -2.0 485,249 + +1.2 485,249 + +1.0 485,250 - -1.1 485,250 - -0.5 485,250 - +2.4 485,250 - +2.7 485,638 + -0.2 485,638 + +0.1 485,638 + +1.5 485,639 - -0.3 485,639 - -0.5 485,639 - +3.2 485,639 - +0.3 485,639 - +0.1 485,639 - -1.3 485,843 + GFF2435 0.15 +1.0 485,843 + GFF2435 0.15 +0.7 485,843 + GFF2435 0.15 +0.1 485,844 - GFF2435 0.15 +0.1 485,844 - GFF2435 0.15 -0.6 485,844 - GFF2435 0.15 +0.1 485,844 - GFF2435 0.15 -0.9 485,844 - GFF2435 0.15 -0.4 485,924 + GFF2435 0.20 -2.1 485,924 + GFF2435 0.20 -1.1 485,925 - GFF2435 0.20 -1.2 485,948 + GFF2435 0.22 -2.2 485,948 + GFF2435 0.22 +0.2 486,062 + GFF2435 0.28 -0.9 486,062 + GFF2435 0.28 -2.5 486,269 + GFF2435 0.41 -2.1 486,521 + GFF2435 0.56 +1.9 486,521 + GFF2435 0.56 -0.1 486,522 - GFF2435 0.56 -2.3 486,719 + GFF2435 0.68 -0.1 486,719 + GFF2435 0.68 +0.4 486,720 - GFF2435 0.68 -0.5 486,720 - GFF2435 0.68 +0.5 487,270 + -0.9 487,271 - +1.6 487,271 - +0.5 487,271 - +0.5 487,271 - +1.1 487,271 - -1.4 487,271 - +1.8 487,300 + GFF2436 0.12 -1.9 487,300 + GFF2436 0.12 +5.0 487,459 - GFF2436 0.55 +0.3 487,459 - GFF2436 0.55 +1.0 487,529 - GFF2436 0.75 +0.8 487,753 + GFF2437 0.13 +1.1 487,753 + GFF2437 0.13 -0.6 487,754 - GFF2437 0.13 -0.2 487,987 + GFF2437 0.49 +1.4 487,988 - GFF2437 0.49 -0.5 488,200 + GFF2437 0.81 -2.2 488,200 + GFF2437 0.81 +0.1 488,200 + GFF2437 0.81 -0.4 488,201 - GFF2437 0.81 -0.6 488,257 + +0.4
Or see this region's nucleotide sequence