Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2414 and GFF2415 are separated by 12 nucleotides GFF2415 and GFF2416 are separated by 92 nucleotides GFF2416 and GFF2417 are separated by 0 nucleotides
GFF2414 - Cell division protein FtsW, at 465,675 to 466,202
GFF2414
GFF2415 - Trans-aconitate 2-methyltransferase (EC 2.1.1.144), at 466,215 to 466,979
GFF2415
GFF2416 - Transcriptional regulator YbhD, LysR family, at 467,072 to 467,983
GFF2416
GFF2417 - putative amidase, at 467,984 to 469,414
GFF2417
Position (kb) 467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.116 kb on + strand, within GFF2414 at 466.116 kb on + strand, within GFF2414 at 466.116 kb on + strand, within GFF2414 at 466.117 kb on - strand, within GFF2414 at 466.117 kb on - strand, within GFF2414 at 466.306 kb on + strand, within GFF2415 at 466.306 kb on + strand, within GFF2415 at 466.306 kb on + strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.355 kb on - strand, within GFF2415 at 466.355 kb on - strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.421 kb on - strand, within GFF2415 at 466.421 kb on - strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.437 kb on + strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.474 kb on + strand, within GFF2415 at 466.475 kb on - strand, within GFF2415 at 466.477 kb on + strand, within GFF2415 at 466.958 kb on - strand at 467.035 kb on - strand at 467.415 kb on - strand, within GFF2416 at 467.570 kb on + strand, within GFF2416 at 467.571 kb on - strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.930 kb on + strand at 467.930 kb on + strand at 468.613 kb on - strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.771 kb on + strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 466,116 + GFF2414 0.84 -0.7 466,116 + GFF2414 0.84 +0.2 466,116 + GFF2414 0.84 -0.9 466,117 - GFF2414 0.84 -2.2 466,117 - GFF2414 0.84 -1.2 466,306 + GFF2415 0.12 +0.9 466,306 + GFF2415 0.12 -3.3 466,306 + GFF2415 0.12 -1.1 466,307 - GFF2415 0.12 +0.5 466,307 - GFF2415 0.12 +0.3 466,307 - GFF2415 0.12 -3.0 466,355 - GFF2415 0.18 +0.4 466,355 - GFF2415 0.18 -0.6 466,420 + GFF2415 0.27 -0.1 466,420 + GFF2415 0.27 -1.4 466,420 + GFF2415 0.27 +0.1 466,420 + GFF2415 0.27 -0.6 466,420 + GFF2415 0.27 -0.9 466,421 - GFF2415 0.27 -0.9 466,421 - GFF2415 0.27 +0.4 466,423 + GFF2415 0.27 -1.2 466,423 + GFF2415 0.27 +0.6 466,423 + GFF2415 0.27 +1.2 466,423 + GFF2415 0.27 -0.2 466,424 - GFF2415 0.27 +2.4 466,424 - GFF2415 0.27 -2.2 466,424 - GFF2415 0.27 +0.1 466,424 - GFF2415 0.27 -1.9 466,437 + GFF2415 0.29 +1.6 466,438 - GFF2415 0.29 +0.2 466,438 - GFF2415 0.29 +0.5 466,438 - GFF2415 0.29 -1.5 466,474 + GFF2415 0.34 +0.5 466,475 - GFF2415 0.34 +0.5 466,477 + GFF2415 0.34 -2.7 466,958 - +0.4 467,035 - -1.2 467,415 - GFF2416 0.38 -1.9 467,570 + GFF2416 0.55 -0.8 467,571 - GFF2416 0.55 -1.5 467,732 + GFF2416 0.72 -0.2 467,732 + GFF2416 0.72 +0.9 467,733 - GFF2416 0.72 +2.1 467,733 - GFF2416 0.72 +1.1 467,733 - GFF2416 0.72 -0.3 467,930 + -0.6 467,930 + +1.9 468,613 - GFF2417 0.44 +2.4 468,663 + GFF2417 0.47 -0.6 468,663 + GFF2417 0.47 -1.4 468,663 + GFF2417 0.47 -2.9 468,664 - GFF2417 0.48 -0.2 468,664 - GFF2417 0.48 -0.4 468,664 - GFF2417 0.48 -1.2 468,664 - GFF2417 0.48 -0.8 468,664 - GFF2417 0.48 +1.1 468,664 - GFF2417 0.48 +1.4 468,771 + GFF2417 0.55 -2.7 468,772 - GFF2417 0.55 -0.8 468,772 - GFF2417 0.55 -0.0 468,772 - GFF2417 0.55 +0.3 468,772 - GFF2417 0.55 +1.3 468,772 - GFF2417 0.55 -0.9
Or see this region's nucleotide sequence