Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2386 and GFF2387 overlap by 13 nucleotides GFF2387 and GFF2388 are separated by 2 nucleotides GFF2388 and GFF2389 are separated by 333 nucleotides GFF2389 and GFF2390 are separated by 66 nucleotides GFF2390 and GFF2391 are separated by 19 nucleotides
GFF2386 - Response regulator BaeR, at 439,679 to 439,999
GFF2386
GFF2387 - no description, at 439,987 to 440,280
GFF2387
GFF2388 - hypothetical protein, at 440,283 to 440,759
GFF2388
GFF2389 - hypothetical protein, at 441,093 to 441,320
GFF2389
GFF2390 - no description, at 441,387 to 441,695
GFF2390
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 439.407 kb on + strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.409 kb on + strand at 439.409 kb on + strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.628 kb on - strand at 439.629 kb on + strand at 439.630 kb on - strand at 439.650 kb on + strand at 439.651 kb on - strand at 439.862 kb on + strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.970 kb on + strand at 439.970 kb on + strand at 440.495 kb on - strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.659 kb on + strand, within GFF2388 at 440.660 kb on - strand, within GFF2388 at 440.898 kb on + strand at 441.183 kb on + strand, within GFF2389 at 441.207 kb on + strand, within GFF2389 at 441.208 kb on - strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.222 kb on + strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.223 kb on - strand, within GFF2389 at 441.386 kb on + strand at 441.386 kb on + strand at 441.564 kb on + strand, within GFF2390 at 441.565 kb on - strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.589 kb on - strand, within GFF2390 at 441.603 kb on + strand, within GFF2390 at 441.604 kb on - strand, within GFF2390
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 439,407 + +0.1 439,408 - +0.4 439,408 - +0.5 439,408 - +0.7 439,408 - +0.1 439,409 + +1.1 439,409 + -3.1 439,410 - -0.7 439,410 - -1.7 439,410 - -2.0 439,410 - -0.3 439,628 - -2.8 439,629 + +0.6 439,630 - -1.5 439,650 + +1.1 439,651 - +0.0 439,862 + GFF2386 0.57 +1.4 439,863 - GFF2386 0.57 +0.1 439,863 - GFF2386 0.57 +1.1 439,863 - GFF2386 0.57 +0.7 439,970 + +1.2 439,970 + +1.1 440,495 - GFF2388 0.44 +0.3 440,659 + GFF2388 0.79 +1.4 440,659 + GFF2388 0.79 +0.5 440,660 - GFF2388 0.79 +1.0 440,898 + -0.6 441,183 + GFF2389 0.39 +0.6 441,207 + GFF2389 0.50 +0.1 441,208 - GFF2389 0.50 +0.6 441,222 + GFF2389 0.57 -0.7 441,222 + GFF2389 0.57 -0.9 441,222 + GFF2389 0.57 +0.4 441,223 - GFF2389 0.57 -3.0 441,223 - GFF2389 0.57 -2.7 441,223 - GFF2389 0.57 -0.1 441,223 - GFF2389 0.57 -1.3 441,223 - GFF2389 0.57 -0.8 441,386 + -1.8 441,386 + -0.2 441,564 + GFF2390 0.57 +2.0 441,565 - GFF2390 0.58 -0.0 441,588 + GFF2390 0.65 -2.6 441,588 + GFF2390 0.65 +0.8 441,588 + GFF2390 0.65 -0.8 441,589 - GFF2390 0.65 -0.9 441,603 + GFF2390 0.70 +0.5 441,604 - GFF2390 0.70 +1.6
Or see this region's nucleotide sequence