Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2379 and GFF2380 are separated by 7 nucleotides GFF2380 and GFF2381 are separated by 43 nucleotides GFF2381 and GFF2382 are separated by 59 nucleotides
GFF2379 - Serine/threonine protein kinase, at 433,542 to 434,549
GFF2379
GFF2380 - Protein phosphatase 2C-like, at 434,557 to 435,465
GFF2380
GFF2381 - Ribonuclease PH (EC 2.7.7.56), at 435,509 to 436,243
GFF2381
GFF2382 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66), at 436,303 to 436,908
GFF2382
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 433.594 kb on - strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.604 kb on - strand at 433.604 kb on - strand at 433.604 kb on - strand at 433.638 kb on + strand at 433.638 kb on + strand at 433.638 kb on + strand at 433.639 kb on - strand at 433.639 kb on - strand at 433.683 kb on + strand, within GFF2379 at 433.683 kb on + strand, within GFF2379 at 433.759 kb on - strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.173 kb on - strand, within GFF2379 at 434.173 kb on - strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.440 kb on - strand, within GFF2379 at 434.440 kb on - strand, within GFF2379 at 434.623 kb on + strand at 434.623 kb on + strand at 434.624 kb on - strand at 434.624 kb on - strand at 434.624 kb on - strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.732 kb on - strand, within GFF2380 at 434.818 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 435.707 kb on + strand, within GFF2381 at 436.049 kb on + strand, within GFF2381 at 436.050 kb on - strand, within GFF2381 at 436.050 kb on - strand, within GFF2381 at 436.254 kb on + strand at 436.254 kb on + strand at 436.255 kb on - strand at 436.255 kb on - strand at 436.255 kb on - strand at 436.255 kb on - strand at 436.255 kb on - strand at 436.255 kb on - strand at 436.302 kb on + strand at 436.303 kb on - strand at 436.303 kb on - strand at 436.455 kb on + strand, within GFF2382
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 433,594 - +0.6 433,603 + -1.1 433,603 + +1.7 433,603 + +1.1 433,603 + +0.1 433,603 + +1.1 433,604 - +5.7 433,604 - +0.9 433,604 - -0.2 433,638 + +3.1 433,638 + -3.0 433,638 + +0.5 433,639 - +1.2 433,639 - +2.2 433,683 + GFF2379 0.14 +1.6 433,683 + GFF2379 0.14 +0.3 433,759 - GFF2379 0.22 +0.3 433,866 + GFF2379 0.32 -1.2 433,866 + GFF2379 0.32 +0.4 433,866 + GFF2379 0.32 +3.1 433,866 + GFF2379 0.32 +1.8 433,866 + GFF2379 0.32 -0.2 433,866 + GFF2379 0.32 -1.5 433,866 + GFF2379 0.32 +0.4 433,866 + GFF2379 0.32 -1.0 433,866 + GFF2379 0.32 -1.2 433,866 + GFF2379 0.32 -0.1 433,866 + GFF2379 0.32 +1.5 433,866 + GFF2379 0.32 +1.9 433,866 + GFF2379 0.32 -1.2 433,866 + GFF2379 0.32 +0.3 433,866 + GFF2379 0.32 -0.6 433,866 + GFF2379 0.32 +2.1 433,866 + GFF2379 0.32 +1.3 433,866 + GFF2379 0.32 +1.7 433,867 - GFF2379 0.32 +1.0 433,867 - GFF2379 0.32 -0.1 433,867 - GFF2379 0.32 -1.6 433,867 - GFF2379 0.32 +1.1 433,867 - GFF2379 0.32 +2.3 433,867 - GFF2379 0.32 +2.3 433,867 - GFF2379 0.32 +2.5 433,867 - GFF2379 0.32 -2.5 433,867 - GFF2379 0.32 +3.0 433,867 - GFF2379 0.32 +0.1 433,867 - GFF2379 0.32 +0.4 433,867 - GFF2379 0.32 +1.9 433,867 - GFF2379 0.32 -0.2 433,881 + GFF2379 0.34 +1.3 433,881 + GFF2379 0.34 +0.4 433,881 + GFF2379 0.34 +0.7 433,881 + GFF2379 0.34 +1.4 433,881 + GFF2379 0.34 +1.4 433,882 - GFF2379 0.34 +1.7 433,882 - GFF2379 0.34 +1.7 433,882 - GFF2379 0.34 +1.8 434,013 + GFF2379 0.47 +1.4 434,013 + GFF2379 0.47 +3.5 434,013 + GFF2379 0.47 +2.0 434,014 - GFF2379 0.47 -1.2 434,014 - GFF2379 0.47 -0.8 434,014 - GFF2379 0.47 -1.5 434,014 - GFF2379 0.47 +1.3 434,142 + GFF2379 0.60 +1.6 434,142 + GFF2379 0.60 +1.6 434,142 + GFF2379 0.60 +1.8 434,142 + GFF2379 0.60 +1.6 434,142 + GFF2379 0.60 +1.1 434,142 + GFF2379 0.60 -0.1 434,142 + GFF2379 0.60 +0.2 434,142 + GFF2379 0.60 -0.2 434,142 + GFF2379 0.60 +0.8 434,142 + GFF2379 0.60 +1.9 434,142 + GFF2379 0.60 -0.1 434,142 + GFF2379 0.60 +4.3 434,143 - GFF2379 0.60 +2.1 434,143 - GFF2379 0.60 +2.7 434,143 - GFF2379 0.60 +1.8 434,143 - GFF2379 0.60 +2.8 434,172 + GFF2379 0.62 +0.7 434,172 + GFF2379 0.62 +1.2 434,172 + GFF2379 0.62 +2.1 434,173 - GFF2379 0.63 +2.3 434,173 - GFF2379 0.63 +0.8 434,211 + GFF2379 0.66 +3.3 434,211 + GFF2379 0.66 -0.6 434,211 + GFF2379 0.66 +0.4 434,211 + GFF2379 0.66 -0.9 434,211 + GFF2379 0.66 +1.1 434,211 + GFF2379 0.66 +1.9 434,211 + GFF2379 0.66 -0.3 434,211 + GFF2379 0.66 +1.8 434,211 + GFF2379 0.66 -0.3 434,211 + GFF2379 0.66 +0.6 434,212 - GFF2379 0.66 +3.0 434,212 - GFF2379 0.66 -0.0 434,212 - GFF2379 0.66 -2.1 434,212 - GFF2379 0.66 -2.1 434,212 - GFF2379 0.66 +0.6 434,212 - GFF2379 0.66 +1.0 434,212 - GFF2379 0.66 -1.6 434,212 - GFF2379 0.66 +1.4 434,212 - GFF2379 0.66 +1.7 434,212 - GFF2379 0.66 +0.8 434,212 - GFF2379 0.66 +0.8 434,212 - GFF2379 0.66 -1.0 434,212 - GFF2379 0.66 +3.2 434,232 + GFF2379 0.68 -0.9 434,232 + GFF2379 0.68 +2.5 434,232 + GFF2379 0.68 +2.1 434,232 + GFF2379 0.68 +2.6 434,232 + GFF2379 0.68 +0.5 434,233 - GFF2379 0.69 -1.9 434,233 - GFF2379 0.69 -0.2 434,233 - GFF2379 0.69 +1.9 434,233 - GFF2379 0.69 -0.8 434,233 - GFF2379 0.69 -0.2 434,325 + GFF2379 0.78 +0.1 434,325 + GFF2379 0.78 +1.4 434,325 + GFF2379 0.78 +1.5 434,325 + GFF2379 0.78 +1.7 434,326 - GFF2379 0.78 -0.3 434,326 - GFF2379 0.78 -1.3 434,326 - GFF2379 0.78 -1.1 434,440 - GFF2379 0.89 +3.7 434,440 - GFF2379 0.89 +1.4 434,623 + +0.2 434,623 + -0.4 434,624 - -2.2 434,624 - +1.4 434,624 - +0.1 434,629 + +2.2 434,629 + -1.0 434,629 + +0.9 434,629 + -0.8 434,630 - -0.4 434,630 - +1.5 434,630 - -1.9 434,630 - +2.7 434,630 - +0.1 434,630 - +0.4 434,630 - -1.8 434,630 - -0.4 434,732 - GFF2380 0.19 -2.6 434,818 + GFF2380 0.29 -1.3 434,923 + GFF2380 0.40 -0.9 434,923 + GFF2380 0.40 -1.2 434,923 + GFF2380 0.40 -3.3 434,923 + GFF2380 0.40 -2.2 434,923 + GFF2380 0.40 +0.2 434,924 - GFF2380 0.40 +1.4 434,924 - GFF2380 0.40 -1.9 434,924 - GFF2380 0.40 -0.6 434,924 - GFF2380 0.40 -1.1 435,707 + GFF2381 0.27 -0.2 436,049 + GFF2381 0.73 -2.5 436,050 - GFF2381 0.74 +0.6 436,050 - GFF2381 0.74 -1.7 436,254 + -1.2 436,254 + +1.4 436,255 - +2.4 436,255 - +0.8 436,255 - -2.7 436,255 - +0.3 436,255 - +0.8 436,255 - +0.2 436,302 + -0.7 436,303 - +0.2 436,303 - -0.9 436,455 + GFF2382 0.25 +0.1
Or see this region's nucleotide sequence