Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2342 and GFF2343 are separated by 5 nucleotides GFF2343 and GFF2344 overlap by 4 nucleotides GFF2344 and GFF2345 are separated by 112 nucleotides GFF2345 and GFF2346 overlap by 15 nucleotides GFF2346 and GFF2347 are separated by 36 nucleotides
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
GFF2344 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 395,554 to 396,504
GFF2344
GFF2345 - Uncharacterized ferredoxin-like protein YfhL, at 396,617 to 396,886
GFF2345
GFF2346 - no description, at 396,872 to 397,381
GFF2346
GFF2347 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 397,418 to 398,050
GFF2347
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 394.609 kb on - strand at 394.683 kb on + strand at 394.683 kb on + strand at 394.684 kb on - strand at 394.684 kb on - strand at 395.250 kb on - strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.490 kb on + strand at 396.491 kb on - strand at 396.521 kb on + strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.833 kb on + strand, within GFF2345 at 396.833 kb on + strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.834 kb on - strand, within GFF2345 at 396.858 kb on + strand, within GFF2345 at 396.859 kb on - strand, within GFF2345 at 396.859 kb on - strand, within GFF2345 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.086 kb on + strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.087 kb on - strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.237 kb on + strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.238 kb on - strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.239 kb on + strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.240 kb on - strand, within GFF2346 at 397.302 kb on + strand, within GFF2346 at 397.302 kb on + strand, within GFF2346 at 397.303 kb on - strand, within GFF2346 at 397.303 kb on - strand, within GFF2346 at 397.311 kb on - strand, within GFF2346 at 397.419 kb on + strand at 397.419 kb on + strand at 397.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 394,609 - -0.8 394,683 + +0.1 394,683 + +1.3 394,684 - -0.3 394,684 - -1.2 395,250 - GFF2343 0.65 +2.4 395,334 + GFF2343 0.74 +0.1 395,334 + GFF2343 0.74 +0.2 395,335 - GFF2343 0.75 -1.9 395,335 - GFF2343 0.75 -0.3 395,558 - -1.4 395,558 - -1.4 395,558 - -0.9 395,558 - -3.0 395,558 - -0.6 395,558 - -2.0 395,720 + GFF2344 0.17 -1.6 395,720 + GFF2344 0.17 -0.6 395,720 + GFF2344 0.17 -2.1 396,263 + GFF2344 0.75 +0.8 396,263 + GFF2344 0.75 -1.7 396,490 + +0.3 396,491 - -0.2 396,521 + +1.3 396,522 - -1.0 396,522 - -0.2 396,522 - -2.4 396,522 - -1.1 396,522 - -1.0 396,522 - -0.8 396,833 + GFF2345 0.80 +2.3 396,833 + GFF2345 0.80 -0.7 396,834 - GFF2345 0.80 +0.8 396,834 - GFF2345 0.80 -1.4 396,834 - GFF2345 0.80 -3.0 396,858 + GFF2345 0.89 -0.7 396,859 - GFF2345 0.90 +0.9 396,859 - GFF2345 0.90 +3.3 397,086 + GFF2346 0.42 +1.7 397,086 + GFF2346 0.42 -0.5 397,086 + GFF2346 0.42 -0.2 397,086 + GFF2346 0.42 -3.6 397,086 + GFF2346 0.42 -2.8 397,086 + GFF2346 0.42 -1.1 397,086 + GFF2346 0.42 -1.7 397,086 + GFF2346 0.42 -0.4 397,086 + GFF2346 0.42 -0.6 397,086 + GFF2346 0.42 -1.1 397,086 + GFF2346 0.42 -2.8 397,086 + GFF2346 0.42 +0.4 397,086 + GFF2346 0.42 +0.4 397,086 + GFF2346 0.42 +1.0 397,086 + GFF2346 0.42 -3.0 397,086 + GFF2346 0.42 -0.9 397,086 + GFF2346 0.42 -1.7 397,086 + GFF2346 0.42 -0.8 397,086 + GFF2346 0.42 -0.6 397,087 - GFF2346 0.42 +0.5 397,087 - GFF2346 0.42 +0.4 397,087 - GFF2346 0.42 -3.2 397,087 - GFF2346 0.42 -0.6 397,087 - GFF2346 0.42 -1.7 397,087 - GFF2346 0.42 +0.1 397,087 - GFF2346 0.42 -2.1 397,237 + GFF2346 0.72 +0.2 397,237 + GFF2346 0.72 +1.1 397,237 + GFF2346 0.72 -1.5 397,238 - GFF2346 0.72 +1.3 397,238 - GFF2346 0.72 +0.3 397,238 - GFF2346 0.72 -2.4 397,238 - GFF2346 0.72 -0.8 397,239 + GFF2346 0.72 -2.0 397,239 + GFF2346 0.72 +2.7 397,239 + GFF2346 0.72 -0.8 397,239 + GFF2346 0.72 -0.9 397,239 + GFF2346 0.72 -2.3 397,239 + GFF2346 0.72 -2.1 397,239 + GFF2346 0.72 -0.4 397,239 + GFF2346 0.72 +2.6 397,240 - GFF2346 0.72 -0.4 397,240 - GFF2346 0.72 -1.8 397,240 - GFF2346 0.72 +0.5 397,240 - GFF2346 0.72 -0.1 397,240 - GFF2346 0.72 +0.2 397,240 - GFF2346 0.72 +6.4 397,302 + GFF2346 0.84 -1.9 397,302 + GFF2346 0.84 -2.7 397,303 - GFF2346 0.85 +1.4 397,303 - GFF2346 0.85 -0.9 397,311 - GFF2346 0.86 +1.2 397,419 + -0.6 397,419 + +0.0 397,420 - -0.1
Or see this region's nucleotide sequence