Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2326 and GFF2327 are separated by 0 nucleotides GFF2327 and GFF2328 are separated by 51 nucleotides GFF2328 and GFF2329 are separated by 31 nucleotides
GFF2326 - Transcriptional regulator, LysR family, at 377,823 to 378,725
GFF2326
GFF2327 - Hydrolase, alpha/beta fold family, at 378,726 to 379,493
GFF2327
GFF2328 - no description, at 379,545 to 380,186
GFF2328
GFF2329 - Phosphoglycerate mutase (EC 5.4.2.11), at 380,218 to 380,916
GFF2329
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.773 kb on + strand at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.331 kb on - strand, within GFF2326 at 378.603 kb on + strand, within GFF2326 at 378.637 kb on - strand at 379.016 kb on - strand, within GFF2327 at 379.017 kb on - strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.112 kb on - strand, within GFF2327 at 379.419 kb on + strand at 379.419 kb on + strand at 379.419 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.513 kb on - strand at 379.638 kb on + strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.777 kb on - strand, within GFF2328 at 379.777 kb on - strand, within GFF2328 at 379.884 kb on + strand, within GFF2328 at 379.965 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.983 kb on + strand, within GFF2328 at 379.983 kb on + strand, within GFF2328 at 379.984 kb on - strand, within GFF2328 at 379.984 kb on - strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.036 kb on + strand, within GFF2328 at 380.036 kb on + strand, within GFF2328 at 380.037 kb on - strand, within GFF2328
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 377,773 + -0.4 378,330 + GFF2326 0.56 +1.7 378,330 + GFF2326 0.56 +0.9 378,330 + GFF2326 0.56 -2.9 378,330 + GFF2326 0.56 +2.4 378,331 - GFF2326 0.56 -1.1 378,603 + GFF2326 0.86 -0.1 378,637 - -0.7 379,016 - GFF2327 0.38 +2.4 379,017 - GFF2327 0.38 -0.9 379,066 + GFF2327 0.44 +1.8 379,066 + GFF2327 0.44 -0.7 379,066 + GFF2327 0.44 -2.4 379,112 - GFF2327 0.50 +2.3 379,419 + +3.3 379,419 + -2.2 379,419 + -1.6 379,471 + -1.4 379,471 + -0.4 379,471 + -0.4 379,472 - -1.2 379,472 - -2.6 379,472 - -2.1 379,472 - +0.6 379,512 + -0.1 379,512 + -2.4 379,512 + +0.8 379,512 + -0.4 379,512 + -0.8 379,513 - +0.2 379,638 + GFF2328 0.14 -2.6 379,648 - GFF2328 0.16 +0.6 379,648 - GFF2328 0.16 -0.9 379,648 - GFF2328 0.16 -1.3 379,776 + GFF2328 0.36 +0.8 379,776 + GFF2328 0.36 +2.7 379,776 + GFF2328 0.36 -1.0 379,776 + GFF2328 0.36 -1.4 379,777 - GFF2328 0.36 -1.6 379,777 - GFF2328 0.36 -0.6 379,884 + GFF2328 0.53 -1.2 379,965 + GFF2328 0.65 +0.8 379,974 + GFF2328 0.67 -2.1 379,974 + GFF2328 0.67 -1.0 379,974 + GFF2328 0.67 -1.0 379,974 + GFF2328 0.67 +1.5 379,974 + GFF2328 0.67 -1.7 379,974 + GFF2328 0.67 -2.0 379,975 - GFF2328 0.67 -0.6 379,975 - GFF2328 0.67 -0.2 379,975 - GFF2328 0.67 -0.8 379,975 - GFF2328 0.67 -1.2 379,975 - GFF2328 0.67 -0.2 379,975 - GFF2328 0.67 +0.6 379,975 - GFF2328 0.67 -0.9 379,983 + GFF2328 0.68 -0.7 379,983 + GFF2328 0.68 -1.7 379,984 - GFF2328 0.68 -2.9 379,984 - GFF2328 0.68 +0.4 380,034 + GFF2328 0.76 -1.4 380,034 + GFF2328 0.76 -0.9 380,034 + GFF2328 0.76 -0.4 380,035 - GFF2328 0.76 +0.8 380,035 - GFF2328 0.76 -1.2 380,035 - GFF2328 0.76 -2.0 380,036 + GFF2328 0.76 +0.6 380,036 + GFF2328 0.76 -0.1 380,037 - GFF2328 0.77 +3.6
Or see this region's nucleotide sequence