Strain Fitness in Variovorax sp. SCN45 around GFF2317

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2316 and GFF2317 are separated by 14 nucleotidesGFF2317 and GFF2318 are separated by 8 nucleotides GFF2316 - FIG015547: peptidase, M16 family, at 367,731 to 369,131 GFF2316 GFF2317 - FIG015287: Zinc protease, at 369,146 to 370,531 GFF2317 GFF2318 - Transcriptional regulator ArgP, LysR family, at 370,540 to 371,454 GFF2318 Position (kb) 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 368.277 kb on + strand, within GFF2316at 368.277 kb on + strand, within GFF2316at 368.278 kb on - strand, within GFF2316at 368.278 kb on - strand, within GFF2316at 368.278 kb on - strand, within GFF2316at 368.278 kb on - strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.358 kb on + strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.359 kb on - strand, within GFF2316at 368.433 kb on + strand, within GFF2316at 368.433 kb on + strand, within GFF2316at 368.434 kb on - strand, within GFF2316at 368.434 kb on - strand, within GFF2316at 368.434 kb on - strand, within GFF2316at 368.434 kb on - strand, within GFF2316at 368.436 kb on + strand, within GFF2316at 368.436 kb on + strand, within GFF2316at 368.436 kb on + strand, within GFF2316at 368.436 kb on + strand, within GFF2316at 368.437 kb on - strand, within GFF2316at 368.437 kb on - strand, within GFF2316at 368.437 kb on - strand, within GFF2316at 368.437 kb on - strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.541 kb on + strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.542 kb on - strand, within GFF2316at 368.556 kb on + strand, within GFF2316at 368.556 kb on + strand, within GFF2316at 368.556 kb on + strand, within GFF2316at 368.557 kb on - strand, within GFF2316at 368.557 kb on - strand, within GFF2316at 368.640 kb on + strand, within GFF2316at 368.640 kb on + strand, within GFF2316at 368.640 kb on + strand, within GFF2316at 368.640 kb on + strand, within GFF2316at 368.641 kb on - strand, within GFF2316at 368.641 kb on - strand, within GFF2316at 368.710 kb on - strand, within GFF2316at 368.710 kb on - strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.889 kb on + strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 368.890 kb on - strand, within GFF2316at 369.030 kb on + strandat 369.031 kb on - strandat 369.031 kb on - strandat 369.031 kb on - strandat 369.031 kb on - strandat 369.031 kb on - strandat 369.276 kb on + strandat 369.278 kb on + strandat 369.278 kb on + strandat 369.278 kb on + strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.279 kb on - strandat 369.515 kb on + strand, within GFF2317at 369.515 kb on + strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.516 kb on - strand, within GFF2317at 369.704 kb on + strand, within GFF2317at 369.705 kb on - strand, within GFF2317at 369.719 kb on + strand, within GFF2317at 369.719 kb on + strand, within GFF2317at 369.782 kb on + strand, within GFF2317at 369.783 kb on - strand, within GFF2317at 369.783 kb on - strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.052 kb on + strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.053 kb on - strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.121 kb on + strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.122 kb on - strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.130 kb on + strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.131 kb on - strand, within GFF2317at 370.383 kb on - strand, within GFF2317at 370.383 kb on - strand, within GFF2317at 370.530 kb on - strandat 370.530 kb on - strandat 370.541 kb on + strandat 370.541 kb on + strandat 370.541 kb on + strandat 370.542 kb on - strandat 370.542 kb on - strandat 370.635 kb on - strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.469 kb on - strandat 371.504 kb on + strandat 371.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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368,277 + GFF2316 0.39 -1.1
368,277 + GFF2316 0.39 -0.3
368,278 - GFF2316 0.39 -1.8
368,278 - GFF2316 0.39 -0.9
368,278 - GFF2316 0.39 -1.5
368,278 - GFF2316 0.39 +0.3
368,358 + GFF2316 0.45 -0.6
368,358 + GFF2316 0.45 -2.4
368,358 + GFF2316 0.45 -0.6
368,358 + GFF2316 0.45 -0.0
368,358 + GFF2316 0.45 -2.2
368,358 + GFF2316 0.45 -0.2
368,358 + GFF2316 0.45 +0.4
368,358 + GFF2316 0.45 +0.6
368,358 + GFF2316 0.45 -0.5
368,359 - GFF2316 0.45 -0.8
368,359 - GFF2316 0.45 +0.3
368,359 - GFF2316 0.45 -1.8
368,359 - GFF2316 0.45 +0.1
368,359 - GFF2316 0.45 -0.8
368,359 - GFF2316 0.45 +0.1
368,433 + GFF2316 0.50 -0.7
368,433 + GFF2316 0.50 +0.7
368,434 - GFF2316 0.50 +1.1
368,434 - GFF2316 0.50 +3.9
368,434 - GFF2316 0.50 -0.0
368,434 - GFF2316 0.50 -0.0
368,436 + GFF2316 0.50 +1.2
368,436 + GFF2316 0.50 +0.7
368,436 + GFF2316 0.50 +0.6
368,436 + GFF2316 0.50 +0.5
368,437 - GFF2316 0.50 +0.7
368,437 - GFF2316 0.50 -1.6
368,437 - GFF2316 0.50 -1.4
368,437 - GFF2316 0.50 +1.0
368,541 + GFF2316 0.58 -0.7
368,541 + GFF2316 0.58 +0.4
368,541 + GFF2316 0.58 -2.2
368,541 + GFF2316 0.58 -1.7
368,541 + GFF2316 0.58 -0.4
368,541 + GFF2316 0.58 +1.2
368,541 + GFF2316 0.58 -0.4
368,541 + GFF2316 0.58 -0.2
368,541 + GFF2316 0.58 -1.1
368,541 + GFF2316 0.58 -0.0
368,541 + GFF2316 0.58 -1.9
368,541 + GFF2316 0.58 -1.7
368,541 + GFF2316 0.58 +1.3
368,541 + GFF2316 0.58 -1.0
368,542 - GFF2316 0.58 -1.9
368,542 - GFF2316 0.58 +1.4
368,542 - GFF2316 0.58 -1.2
368,542 - GFF2316 0.58 -2.3
368,542 - GFF2316 0.58 -0.1
368,542 - GFF2316 0.58 -1.5
368,542 - GFF2316 0.58 +0.8
368,542 - GFF2316 0.58 +0.3
368,542 - GFF2316 0.58 -1.2
368,542 - GFF2316 0.58 -1.9
368,542 - GFF2316 0.58 -4.0
368,542 - GFF2316 0.58 +0.4
368,542 - GFF2316 0.58 +0.5
368,542 - GFF2316 0.58 -1.2
368,542 - GFF2316 0.58 -0.6
368,542 - GFF2316 0.58 -0.9
368,542 - GFF2316 0.58 -0.2
368,542 - GFF2316 0.58 -0.1
368,542 - GFF2316 0.58 -4.4
368,542 - GFF2316 0.58 -1.2
368,542 - GFF2316 0.58 -0.6
368,556 + GFF2316 0.59 +0.5
368,556 + GFF2316 0.59 -0.1
368,556 + GFF2316 0.59 -0.6
368,557 - GFF2316 0.59 -2.6
368,557 - GFF2316 0.59 -0.2
368,640 + GFF2316 0.65 +0.9
368,640 + GFF2316 0.65 +0.1
368,640 + GFF2316 0.65 -0.7
368,640 + GFF2316 0.65 -0.7
368,641 - GFF2316 0.65 +0.4
368,641 - GFF2316 0.65 -0.9
368,710 - GFF2316 0.70 -0.3
368,710 - GFF2316 0.70 +0.2
368,889 + GFF2316 0.83 -2.5
368,889 + GFF2316 0.83 +0.7
368,889 + GFF2316 0.83 -0.9
368,889 + GFF2316 0.83 +2.4
368,889 + GFF2316 0.83 +0.1
368,889 + GFF2316 0.83 -3.1
368,889 + GFF2316 0.83 +0.1
368,889 + GFF2316 0.83 -1.4
368,889 + GFF2316 0.83 +1.1
368,889 + GFF2316 0.83 +0.4
368,889 + GFF2316 0.83 -1.4
368,889 + GFF2316 0.83 +1.4
368,889 + GFF2316 0.83 +0.0
368,890 - GFF2316 0.83 +1.3
368,890 - GFF2316 0.83 -1.0
368,890 - GFF2316 0.83 +1.6
368,890 - GFF2316 0.83 +0.8
368,890 - GFF2316 0.83 +0.3
368,890 - GFF2316 0.83 +0.1
368,890 - GFF2316 0.83 +0.8
368,890 - GFF2316 0.83 -0.6
368,890 - GFF2316 0.83 +1.2
368,890 - GFF2316 0.83 +0.5
369,030 + -0.8
369,031 - +0.5
369,031 - -0.2
369,031 - +1.1
369,031 - +1.4
369,031 - -1.3
369,276 + -0.8
369,278 + -0.9
369,278 + -0.1
369,278 + -1.2
369,279 - +0.4
369,279 - +1.4
369,279 - -0.2
369,279 - -1.1
369,279 - -0.3
369,279 - +1.7
369,279 - +0.4
369,279 - +0.5
369,279 - -1.0
369,279 - +0.8
369,279 - -1.1
369,515 + GFF2317 0.27 -2.5
369,515 + GFF2317 0.27 -1.7
369,516 - GFF2317 0.27 -2.8
369,516 - GFF2317 0.27 +0.2
369,516 - GFF2317 0.27 +0.8
369,516 - GFF2317 0.27 -0.1
369,516 - GFF2317 0.27 +1.0
369,516 - GFF2317 0.27 +0.0
369,704 + GFF2317 0.40 -2.1
369,705 - GFF2317 0.40 -0.4
369,719 + GFF2317 0.41 -1.6
369,719 + GFF2317 0.41 -0.2
369,782 + GFF2317 0.46 -3.0
369,783 - GFF2317 0.46 +2.1
369,783 - GFF2317 0.46 -2.1
370,052 + GFF2317 0.65 +0.4
370,052 + GFF2317 0.65 +2.4
370,052 + GFF2317 0.65 +0.6
370,052 + GFF2317 0.65 -1.3
370,052 + GFF2317 0.65 -0.6
370,052 + GFF2317 0.65 -0.1
370,052 + GFF2317 0.65 +0.0
370,052 + GFF2317 0.65 -1.8
370,052 + GFF2317 0.65 -0.2
370,052 + GFF2317 0.65 -1.4
370,052 + GFF2317 0.65 -2.5
370,052 + GFF2317 0.65 +0.3
370,052 + GFF2317 0.65 -1.1
370,052 + GFF2317 0.65 -1.6
370,053 - GFF2317 0.65 -0.7
370,053 - GFF2317 0.65 -1.1
370,053 - GFF2317 0.65 -0.9
370,053 - GFF2317 0.65 -2.5
370,053 - GFF2317 0.65 -0.8
370,053 - GFF2317 0.65 -1.8
370,053 - GFF2317 0.65 -1.5
370,053 - GFF2317 0.65 -2.1
370,053 - GFF2317 0.65 +0.4
370,053 - GFF2317 0.65 -0.9
370,053 - GFF2317 0.65 +0.4
370,053 - GFF2317 0.65 +1.4
370,053 - GFF2317 0.65 +0.1
370,053 - GFF2317 0.65 -0.8
370,053 - GFF2317 0.65 -1.1
370,053 - GFF2317 0.65 +2.4
370,053 - GFF2317 0.65 +1.2
370,121 + GFF2317 0.70 +0.3
370,121 + GFF2317 0.70 -1.6
370,121 + GFF2317 0.70 -0.9
370,121 + GFF2317 0.70 -1.1
370,121 + GFF2317 0.70 +0.3
370,121 + GFF2317 0.70 -0.4
370,121 + GFF2317 0.70 -0.6
370,121 + GFF2317 0.70 +0.8
370,122 - GFF2317 0.70 -1.1
370,122 - GFF2317 0.70 +0.8
370,122 - GFF2317 0.70 -0.1
370,122 - GFF2317 0.70 -2.3
370,122 - GFF2317 0.70 +0.1
370,122 - GFF2317 0.70 -0.4
370,122 - GFF2317 0.70 -0.7
370,122 - GFF2317 0.70 +0.5
370,122 - GFF2317 0.70 -1.5
370,122 - GFF2317 0.70 +1.4
370,122 - GFF2317 0.70 -0.9
370,122 - GFF2317 0.70 -0.4
370,122 - GFF2317 0.70 -1.7
370,130 + GFF2317 0.71 -1.0
370,130 + GFF2317 0.71 +0.1
370,130 + GFF2317 0.71 +1.4
370,130 + GFF2317 0.71 -1.1
370,130 + GFF2317 0.71 -2.0
370,130 + GFF2317 0.71 +0.7
370,130 + GFF2317 0.71 -0.8
370,130 + GFF2317 0.71 -0.3
370,130 + GFF2317 0.71 +3.1
370,130 + GFF2317 0.71 +0.8
370,131 - GFF2317 0.71 -0.8
370,131 - GFF2317 0.71 -1.7
370,131 - GFF2317 0.71 -0.4
370,131 - GFF2317 0.71 -0.3
370,131 - GFF2317 0.71 +0.4
370,131 - GFF2317 0.71 -0.4
370,131 - GFF2317 0.71 +0.3
370,383 - GFF2317 0.89 -1.2
370,383 - GFF2317 0.89 -1.9
370,530 - +0.2
370,530 - -3.7
370,541 + -0.4
370,541 + -0.5
370,541 + +2.4
370,542 - +0.1
370,542 - -0.6
370,635 - GFF2318 0.10 -0.9
370,943 + GFF2318 0.44 +1.8
370,943 + GFF2318 0.44 +1.0
370,943 + GFF2318 0.44 -3.5
370,943 + GFF2318 0.44 -1.0
370,943 + GFF2318 0.44 -3.1
370,943 + GFF2318 0.44 +0.2
370,944 - GFF2318 0.44 -1.4
370,944 - GFF2318 0.44 +1.1
370,944 - GFF2318 0.44 -0.4
370,944 - GFF2318 0.44 -0.6
370,944 - GFF2318 0.44 -1.5
370,944 - GFF2318 0.44 +1.5
370,944 - GFF2318 0.44 -1.6
370,944 - GFF2318 0.44 -0.1
370,944 - GFF2318 0.44 -0.6
370,944 - GFF2318 0.44 -1.0
370,944 - GFF2318 0.44 -1.2
371,445 - -0.2
371,445 - +0.8
371,445 - -1.1
371,445 - -1.8
371,469 - -0.3
371,504 + +0.4
371,505 - -0.8

Or see this region's nucleotide sequence