Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2223 and GFF2224 overlap by 8 nucleotides GFF2224 and GFF2225 overlap by 4 nucleotides GFF2225 and GFF2226 overlap by 23 nucleotides GFF2226 and GFF2227 are separated by 175 nucleotides
GFF2223 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 285,309 to 286,025
GFF2223
GFF2224 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 286,018 to 286,884
GFF2224
GFF2225 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 286,881 to 287,924
GFF2225
GFF2226 - no description, at 287,902 to 288,405
GFF2226
GFF2227 - Tricarboxylate transport protein TctC, at 288,581 to 289,588
GFF2227
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.921 kb on + strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.982 kb on + strand at 285.996 kb on + strand at 285.996 kb on + strand at 285.997 kb on - strand at 286.060 kb on + strand at 286.060 kb on + strand at 286.061 kb on - strand at 286.061 kb on - strand at 286.244 kb on - strand, within GFF2224 at 286.586 kb on - strand, within GFF2224 at 286.889 kb on + strand at 286.889 kb on + strand at 286.889 kb on + strand at 287.046 kb on + strand, within GFF2225 at 287.046 kb on + strand, within GFF2225 at 287.046 kb on + strand, within GFF2225 at 287.047 kb on - strand, within GFF2225 at 287.047 kb on - strand, within GFF2225 at 287.137 kb on - strand, within GFF2225 at 287.137 kb on - strand, within GFF2225 at 287.189 kb on - strand, within GFF2225 at 287.262 kb on + strand, within GFF2225 at 287.263 kb on - strand, within GFF2225 at 287.400 kb on + strand, within GFF2225 at 287.400 kb on + strand, within GFF2225 at 287.401 kb on - strand, within GFF2225 at 287.445 kb on + strand, within GFF2225 at 287.446 kb on - strand, within GFF2225 at 287.446 kb on - strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.554 kb on - strand, within GFF2225 at 287.554 kb on - strand, within GFF2225 at 287.595 kb on + strand, within GFF2225 at 287.595 kb on + strand, within GFF2225 at 287.596 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.930 kb on + strand at 287.930 kb on + strand at 287.931 kb on - strand at 287.954 kb on + strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 288.002 kb on + strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.470 kb on - strand at 288.530 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 285,921 + GFF2223 0.85 +0.2 285,922 - GFF2223 0.85 +0.6 285,922 - GFF2223 0.85 -1.8 285,922 - GFF2223 0.85 -2.2 285,922 - GFF2223 0.85 +1.4 285,922 - GFF2223 0.85 -0.7 285,922 - GFF2223 0.85 -1.8 285,922 - GFF2223 0.85 -0.8 285,982 + -1.8 285,996 + -1.8 285,996 + +0.1 285,997 - -0.8 286,060 + -0.2 286,060 + -0.6 286,061 - -0.4 286,061 - -0.8 286,244 - GFF2224 0.26 -0.9 286,586 - GFF2224 0.66 -1.2 286,889 + -2.9 286,889 + -1.2 286,889 + +0.4 287,046 + GFF2225 0.16 +1.0 287,046 + GFF2225 0.16 -1.7 287,046 + GFF2225 0.16 +2.6 287,047 - GFF2225 0.16 -2.3 287,047 - GFF2225 0.16 +0.9 287,137 - GFF2225 0.25 +0.1 287,137 - GFF2225 0.25 -2.2 287,189 - GFF2225 0.30 +0.1 287,262 + GFF2225 0.36 -0.2 287,263 - GFF2225 0.37 +0.5 287,400 + GFF2225 0.50 +1.6 287,400 + GFF2225 0.50 +0.9 287,401 - GFF2225 0.50 -1.8 287,445 + GFF2225 0.54 -2.3 287,446 - GFF2225 0.54 +1.6 287,446 - GFF2225 0.54 -0.3 287,553 + GFF2225 0.64 -0.4 287,553 + GFF2225 0.64 +0.4 287,553 + GFF2225 0.64 -1.1 287,553 + GFF2225 0.64 +1.4 287,553 + GFF2225 0.64 -0.7 287,554 - GFF2225 0.64 +1.4 287,554 - GFF2225 0.64 -0.8 287,595 + GFF2225 0.68 -0.1 287,595 + GFF2225 0.68 +1.2 287,596 - GFF2225 0.68 -0.8 287,767 - GFF2225 0.85 -1.2 287,767 - GFF2225 0.85 +0.8 287,927 + -0.0 287,927 + -2.5 287,927 + -2.0 287,927 + -1.2 287,927 + +0.6 287,928 - -0.2 287,928 - +0.5 287,928 - +1.2 287,930 + -0.6 287,930 + -1.3 287,931 - -1.5 287,954 + GFF2226 0.10 +1.2 287,955 - GFF2226 0.11 -0.4 287,955 - GFF2226 0.11 -0.2 288,002 + GFF2226 0.20 -0.4 288,003 - GFF2226 0.20 +0.2 288,003 - GFF2226 0.20 +0.9 288,248 + GFF2226 0.69 +0.9 288,248 + GFF2226 0.69 -0.8 288,248 + GFF2226 0.69 -1.8 288,359 + +1.4 288,359 + +0.8 288,360 - +0.5 288,360 - -2.4 288,360 - -1.6 288,469 + +0.1 288,469 + +0.5 288,469 + -0.4 288,469 + -0.9 288,470 - -0.1 288,530 + -0.8
Or see this region's nucleotide sequence