Strain Fitness in Variovorax sp. SCN45 around GFF2168

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2167 and GFF2168 are separated by 31 nucleotidesGFF2168 and GFF2169 overlap by 4 nucleotides GFF2167 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 220,681 to 221,880 GFF2167 GFF2168 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 221,912 to 222,835 GFF2168 GFF2169 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222,832 to 224,622 GFF2169 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 221.110 kb on + strand, within GFF2167at 221.110 kb on + strand, within GFF2167at 221.110 kb on + strand, within GFF2167at 221.110 kb on + strand, within GFF2167at 221.110 kb on + strand, within GFF2167at 221.110 kb on + strand, within GFF2167at 221.111 kb on - strand, within GFF2167at 221.111 kb on - strand, within GFF2167at 221.111 kb on - strand, within GFF2167at 221.164 kb on + strand, within GFF2167at 221.428 kb on + strand, within GFF2167at 221.429 kb on - strand, within GFF2167at 221.429 kb on - strand, within GFF2167at 221.429 kb on - strand, within GFF2167at 221.429 kb on - strand, within GFF2167at 221.476 kb on + strand, within GFF2167at 221.476 kb on + strand, within GFF2167at 221.623 kb on + strand, within GFF2167at 221.624 kb on - strand, within GFF2167at 221.624 kb on - strand, within GFF2167at 221.624 kb on - strand, within GFF2167at 221.740 kb on + strand, within GFF2167at 221.740 kb on + strand, within GFF2167at 221.741 kb on - strand, within GFF2167at 221.830 kb on + strandat 221.831 kb on - strandat 221.879 kb on - strandat 221.879 kb on - strandat 221.919 kb on + strandat 221.919 kb on + strandat 221.919 kb on + strandat 221.919 kb on + strandat 221.919 kb on + strandat 221.966 kb on + strandat 221.967 kb on - strandat 222.200 kb on + strand, within GFF2168at 222.201 kb on - strand, within GFF2168at 222.201 kb on - strand, within GFF2168at 222.201 kb on - strand, within GFF2168at 222.831 kb on + strandat 222.831 kb on + strandat 222.831 kb on + strandat 222.831 kb on + strandat 222.832 kb on - strandat 222.832 kb on - strandat 222.832 kb on - strandat 222.832 kb on - strandat 222.913 kb on + strandat 222.913 kb on + strandat 222.914 kb on - strandat 222.914 kb on - strandat 222.916 kb on + strandat 222.916 kb on + strandat 222.916 kb on + strandat 222.917 kb on - strandat 222.917 kb on - strandat 222.950 kb on - strandat 222.950 kb on - strandat 222.950 kb on - strandat 223.162 kb on + strand, within GFF2169at 223.162 kb on + strand, within GFF2169at 223.162 kb on + strand, within GFF2169at 223.163 kb on - strand, within GFF2169at 223.163 kb on - strand, within GFF2169at 223.163 kb on - strand, within GFF2169at 223.252 kb on + strand, within GFF2169at 223.252 kb on + strand, within GFF2169at 223.252 kb on + strand, within GFF2169at 223.252 kb on + strand, within GFF2169at 223.252 kb on + strand, within GFF2169at 223.439 kb on - strand, within GFF2169at 223.519 kb on + strand, within GFF2169at 223.520 kb on - strand, within GFF2169at 223.520 kb on - strand, within GFF2169at 223.600 kb on + strand, within GFF2169at 223.601 kb on - strand, within GFF2169at 223.601 kb on - strand, within GFF2169at 223.601 kb on - strand, within GFF2169at 223.601 kb on - strand, within GFF2169at 223.708 kb on + strand, within GFF2169at 223.708 kb on + strand, within GFF2169at 223.709 kb on - strand, within GFF2169at 223.709 kb on - strand, within GFF2169at 223.709 kb on - strand, within GFF2169

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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221,110 + GFF2167 0.36 -0.6
221,110 + GFF2167 0.36 -0.8
221,110 + GFF2167 0.36 -0.5
221,110 + GFF2167 0.36 -1.2
221,110 + GFF2167 0.36 +0.1
221,110 + GFF2167 0.36 +0.8
221,111 - GFF2167 0.36 +0.9
221,111 - GFF2167 0.36 +1.5
221,111 - GFF2167 0.36 +2.5
221,164 + GFF2167 0.40 +0.9
221,428 + GFF2167 0.62 -0.7
221,429 - GFF2167 0.62 -0.9
221,429 - GFF2167 0.62 +1.2
221,429 - GFF2167 0.62 +1.0
221,429 - GFF2167 0.62 -0.2
221,476 + GFF2167 0.66 -1.0
221,476 + GFF2167 0.66 +0.5
221,623 + GFF2167 0.79 -0.3
221,624 - GFF2167 0.79 -0.9
221,624 - GFF2167 0.79 -0.5
221,624 - GFF2167 0.79 -1.0
221,740 + GFF2167 0.88 -0.3
221,740 + GFF2167 0.88 +2.0
221,741 - GFF2167 0.88 +2.4
221,830 + +0.4
221,831 - +0.8
221,879 - -0.8
221,879 - +2.4
221,919 + -1.8
221,919 + -0.4
221,919 + -0.9
221,919 + -2.2
221,919 + +1.4
221,966 + -2.2
221,967 - -0.5
222,200 + GFF2168 0.31 +1.4
222,201 - GFF2168 0.31 +2.0
222,201 - GFF2168 0.31 +0.8
222,201 - GFF2168 0.31 -1.4
222,831 + -0.4
222,831 + -2.0
222,831 + +0.4
222,831 + -2.1
222,832 - +0.8
222,832 - -1.7
222,832 - +0.5
222,832 - +0.4
222,913 + -1.5
222,913 + -3.2
222,914 - +0.5
222,914 - +0.9
222,916 + -1.8
222,916 + -1.0
222,916 + -2.7
222,917 - -2.3
222,917 - +2.2
222,950 - -0.4
222,950 - -2.0
222,950 - +0.5
223,162 + GFF2169 0.18 +1.4
223,162 + GFF2169 0.18 -2.0
223,162 + GFF2169 0.18 -1.6
223,163 - GFF2169 0.18 -0.8
223,163 - GFF2169 0.18 -1.2
223,163 - GFF2169 0.18 +0.4
223,252 + GFF2169 0.23 +0.3
223,252 + GFF2169 0.23 +1.2
223,252 + GFF2169 0.23 -1.8
223,252 + GFF2169 0.23 +0.3
223,252 + GFF2169 0.23 +1.0
223,439 - GFF2169 0.34 -0.3
223,519 + GFF2169 0.38 -0.2
223,520 - GFF2169 0.38 +0.6
223,520 - GFF2169 0.38 +1.9
223,600 + GFF2169 0.43 -1.0
223,601 - GFF2169 0.43 -0.5
223,601 - GFF2169 0.43 -0.8
223,601 - GFF2169 0.43 +0.1
223,601 - GFF2169 0.43 +0.1
223,708 + GFF2169 0.49 -0.8
223,708 + GFF2169 0.49 +0.3
223,709 - GFF2169 0.49 +0.1
223,709 - GFF2169 0.49 +1.0
223,709 - GFF2169 0.49 -0.9

Or see this region's nucleotide sequence