Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2111 and GFF2112 are separated by 36 nucleotides GFF2112 and GFF2113 are separated by 37 nucleotides GFF2113 and GFF2114 are separated by 121 nucleotides
GFF2111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 160,345 to 161,250
GFF2111
GFF2112 - no description, at 161,287 to 162,063
GFF2112
GFF2113 - NADH dehydrogenase (EC 1.6.99.3), at 162,101 to 162,772
GFF2113
GFF2114 - 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type, at 162,894 to 164,534
GFF2114
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.400 kb on + strand, within GFF2112 at 161.729 kb on + strand, within GFF2112 at 161.729 kb on + strand, within GFF2112 at 161.846 kb on + strand, within GFF2112 at 161.970 kb on - strand, within GFF2112 at 162.411 kb on + strand, within GFF2113 at 162.412 kb on - strand, within GFF2113 at 162.412 kb on - strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.474 kb on + strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.475 kb on - strand, within GFF2113 at 162.544 kb on - strand, within GFF2113 at 162.799 kb on - strand at 162.863 kb on + strand at 163.018 kb on - strand at 163.117 kb on - strand, within GFF2114 at 163.135 kb on - strand, within GFF2114 at 163.206 kb on + strand, within GFF2114 at 163.206 kb on + strand, within GFF2114 at 163.207 kb on - strand, within GFF2114 at 163.366 kb on - strand, within GFF2114 at 163.398 kb on + strand, within GFF2114 at 163.398 kb on + strand, within GFF2114 at 163.444 kb on - strand, within GFF2114 at 163.444 kb on - strand, within GFF2114 at 163.674 kb on + strand, within GFF2114 at 163.674 kb on + strand, within GFF2114 at 163.675 kb on - strand, within GFF2114
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 161,400 + GFF2112 0.15 -2.2 161,729 + GFF2112 0.57 +1.0 161,729 + GFF2112 0.57 +1.5 161,846 + GFF2112 0.72 -1.3 161,970 - GFF2112 0.88 +0.9 162,411 + GFF2113 0.46 +0.4 162,412 - GFF2113 0.46 -1.9 162,412 - GFF2113 0.46 -2.1 162,474 + GFF2113 0.56 +0.2 162,474 + GFF2113 0.56 +0.1 162,474 + GFF2113 0.56 -2.4 162,474 + GFF2113 0.56 -2.1 162,474 + GFF2113 0.56 +2.0 162,474 + GFF2113 0.56 +0.1 162,474 + GFF2113 0.56 +1.8 162,475 - GFF2113 0.56 -0.9 162,475 - GFF2113 0.56 +0.4 162,475 - GFF2113 0.56 +1.3 162,475 - GFF2113 0.56 +1.5 162,475 - GFF2113 0.56 +1.0 162,475 - GFF2113 0.56 +0.3 162,475 - GFF2113 0.56 -0.1 162,475 - GFF2113 0.56 -0.1 162,475 - GFF2113 0.56 -1.0 162,475 - GFF2113 0.56 +1.1 162,475 - GFF2113 0.56 -1.3 162,475 - GFF2113 0.56 +0.3 162,544 - GFF2113 0.66 -0.7 162,799 - -0.9 162,863 + +0.1 163,018 - +1.2 163,117 - GFF2114 0.14 +0.5 163,135 - GFF2114 0.15 -0.1 163,206 + GFF2114 0.19 -0.8 163,206 + GFF2114 0.19 +0.3 163,207 - GFF2114 0.19 +0.9 163,366 - GFF2114 0.29 -0.4 163,398 + GFF2114 0.31 -0.6 163,398 + GFF2114 0.31 +0.9 163,444 - GFF2114 0.34 +0.1 163,444 - GFF2114 0.34 +1.1 163,674 + GFF2114 0.48 +1.9 163,674 + GFF2114 0.48 +1.7 163,675 - GFF2114 0.48 +0.4
Or see this region's nucleotide sequence