Strain Fitness in Variovorax sp. SCN45 around GFF2081

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2080 and GFF2081 are separated by 19 nucleotidesGFF2081 and GFF2082 are separated by 273 nucleotidesGFF2082 and GFF2083 are separated by 9 nucleotides GFF2080 - Protein acetyltransferase, at 127,250 to 129,361 GFF2080 GFF2081 - no description, at 129,381 to 130,445 GFF2081 GFF2082 - transcriptional regulator, Crp/Fnr family, at 130,719 to 131,351 GFF2082 GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963 GFF2083 Position (kb) 129 130 131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 128.511 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.692 kb on - strand, within GFF2080at 128.692 kb on - strand, within GFF2080at 128.820 kb on + strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.826 kb on + strand, within GFF2080at 128.826 kb on + strand, within GFF2080at 128.827 kb on - strand, within GFF2080at 128.913 kb on + strand, within GFF2080at 128.913 kb on + strand, within GFF2080at 128.914 kb on - strand, within GFF2080at 129.246 kb on + strandat 129.529 kb on + strand, within GFF2081at 129.529 kb on + strand, within GFF2081at 129.529 kb on + strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.532 kb on + strand, within GFF2081at 129.532 kb on + strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.632 kb on - strand, within GFF2081at 129.632 kb on - strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.706 kb on + strand, within GFF2081at 129.706 kb on + strand, within GFF2081at 129.736 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.758 kb on - strand, within GFF2081at 129.823 kb on + strand, within GFF2081at 129.824 kb on - strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.835 kb on + strand, within GFF2081at 129.836 kb on - strand, within GFF2081at 129.868 kb on + strand, within GFF2081at 129.869 kb on - strand, within GFF2081at 129.916 kb on + strand, within GFF2081at 130.061 kb on - strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.405 kb on + strandat 130.524 kb on + strandat 130.529 kb on + strandat 130.529 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.851 kb on + strand, within GFF2082at 130.851 kb on + strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.924 kb on - strand, within GFF2082at 130.930 kb on - strand, within GFF2082at 131.133 kb on + strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.293 kb on - strandat 131.293 kb on - strandat 131.293 kb on - strandat 131.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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128,511 + GFF2080 0.60 -1.6
128,532 + GFF2080 0.61 -0.4
128,532 + GFF2080 0.61 -2.4
128,532 + GFF2080 0.61 -1.4
128,533 - GFF2080 0.61 -2.5
128,533 - GFF2080 0.61 -1.0
128,533 - GFF2080 0.61 -0.3
128,691 + GFF2080 0.68 -0.4
128,691 + GFF2080 0.68 -1.6
128,691 + GFF2080 0.68 -2.6
128,691 + GFF2080 0.68 -3.1
128,691 + GFF2080 0.68 -0.6
128,691 + GFF2080 0.68 -0.1
128,692 - GFF2080 0.68 -1.0
128,692 - GFF2080 0.68 +1.0
128,820 + GFF2080 0.74 +0.3
128,821 - GFF2080 0.74 -1.5
128,821 - GFF2080 0.74 +1.0
128,821 - GFF2080 0.74 +2.4
128,826 + GFF2080 0.75 +2.4
128,826 + GFF2080 0.75 -0.3
128,827 - GFF2080 0.75 -2.8
128,913 + GFF2080 0.79 +0.1
128,913 + GFF2080 0.79 -2.1
128,914 - GFF2080 0.79 -0.0
129,246 + -2.7
129,529 + GFF2081 0.14 -1.3
129,529 + GFF2081 0.14 -2.4
129,529 + GFF2081 0.14 +2.6
129,530 - GFF2081 0.14 -3.9
129,530 - GFF2081 0.14 +1.2
129,530 - GFF2081 0.14 +0.5
129,532 + GFF2081 0.14 -1.8
129,532 + GFF2081 0.14 -1.2
129,533 - GFF2081 0.14 +0.1
129,533 - GFF2081 0.14 -3.0
129,533 - GFF2081 0.14 -0.9
129,533 - GFF2081 0.14 +2.2
129,631 + GFF2081 0.23 -2.8
129,631 + GFF2081 0.23 +0.4
129,631 + GFF2081 0.23 -2.4
129,631 + GFF2081 0.23 -1.2
129,631 + GFF2081 0.23 +1.6
129,631 + GFF2081 0.23 +0.8
129,632 - GFF2081 0.24 +0.4
129,632 - GFF2081 0.24 -0.2
129,697 + GFF2081 0.30 +0.7
129,697 + GFF2081 0.30 -1.3
129,697 + GFF2081 0.30 -1.0
129,697 + GFF2081 0.30 -0.7
129,697 + GFF2081 0.30 -0.9
129,698 - GFF2081 0.30 -2.2
129,698 - GFF2081 0.30 -0.9
129,698 - GFF2081 0.30 -0.4
129,698 - GFF2081 0.30 +0.4
129,698 - GFF2081 0.30 +0.2
129,706 + GFF2081 0.31 -2.5
129,706 + GFF2081 0.31 -0.7
129,736 + GFF2081 0.33 +1.0
129,757 + GFF2081 0.35 -0.3
129,757 + GFF2081 0.35 -0.2
129,758 - GFF2081 0.35 -1.3
129,823 + GFF2081 0.42 -0.4
129,824 - GFF2081 0.42 -3.2
129,832 + GFF2081 0.42 -1.1
129,832 + GFF2081 0.42 -1.7
129,832 + GFF2081 0.42 +0.1
129,832 + GFF2081 0.42 +0.8
129,832 + GFF2081 0.42 -0.4
129,833 - GFF2081 0.42 +0.4
129,833 - GFF2081 0.42 -1.0
129,833 - GFF2081 0.42 -1.2
129,833 - GFF2081 0.42 -0.7
129,833 - GFF2081 0.42 -1.6
129,833 - GFF2081 0.42 -0.7
129,835 + GFF2081 0.43 -2.2
129,836 - GFF2081 0.43 +0.2
129,868 + GFF2081 0.46 -0.4
129,869 - GFF2081 0.46 +0.5
129,916 + GFF2081 0.50 +0.1
130,061 - GFF2081 0.64 +1.7
130,084 + GFF2081 0.66 -0.5
130,084 + GFF2081 0.66 +1.1
130,085 - GFF2081 0.66 +1.9
130,085 - GFF2081 0.66 -0.3
130,099 + GFF2081 0.67 -1.5
130,099 + GFF2081 0.67 -1.9
130,099 + GFF2081 0.67 -0.0
130,100 - GFF2081 0.68 -1.6
130,100 - GFF2081 0.68 +1.4
130,348 + -2.0
130,348 + -0.6
130,348 + +3.2
130,348 + +0.5
130,348 + +0.7
130,348 + -2.8
130,348 + +1.5
130,348 + +0.6
130,349 - -2.2
130,349 - -1.2
130,349 - -0.6
130,349 - +0.8
130,349 - -1.8
130,367 - -0.1
130,367 - +0.3
130,367 - -0.7
130,367 - -0.1
130,405 + +1.9
130,524 + -1.6
130,529 + -3.3
130,529 + +0.1
130,743 + -1.6
130,743 + +0.1
130,743 + -0.6
130,743 + -1.7
130,851 + GFF2082 0.21 +0.5
130,851 + GFF2082 0.21 +1.1
130,852 - GFF2082 0.21 -2.4
130,852 - GFF2082 0.21 -1.6
130,852 - GFF2082 0.21 +0.1
130,924 - GFF2082 0.32 -0.5
130,930 - GFF2082 0.33 +0.3
131,133 + GFF2082 0.65 +0.4
131,134 - GFF2082 0.66 -0.2
131,134 - GFF2082 0.66 -1.2
131,134 - GFF2082 0.66 -2.1
131,134 - GFF2082 0.66 -3.0
131,293 - -1.4
131,293 - -0.2
131,293 - -0.3
131,293 - -0.3

Or see this region's nucleotide sequence