Strain Fitness in Variovorax sp. SCN45 around GFF2072

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
117,801	-				-3.0
117,811	+				+0.4
117,811	+				+1.3
117,811	+				-3.0
117,811	+				-1.4
117,811	+				-0.4
117,812	-				-0.0
117,812	-				+2.9
117,812	-				-0.6
117,812	-				-0.7
117,842	+				-0.3
117,842	+				+0.4
117,842	+				-0.4
117,843	-				+0.2
117,843	-				-1.4
118,116	+		GFF2070	0.71	-0.9
118,116	+		GFF2070	0.71	-1.7
118,117	-		GFF2070	0.71	+0.8
118,122	+		GFF2070	0.72	-2.6
118,122	+		GFF2070	0.72	-0.6
118,122	+		GFF2070	0.72	-0.2
118,122	+		GFF2070	0.72	+1.0
118,122	+		GFF2070	0.72	-0.9
118,122	+		GFF2070	0.72	-0.2
118,123	-		GFF2070	0.73	+0.5
118,123	-		GFF2070	0.73	-0.2
118,123	-		GFF2070	0.73	-1.8
118,123	-		GFF2070	0.73	+1.4
118,123	-		GFF2070	0.73	-1.0
118,123	-		GFF2070	0.73	-0.7
118,242	+				+1.4
118,242	+				-2.0
118,242	+				-2.1
118,243	-				+1.2
118,243	-				-0.1
118,762	+				-2.1
118,762	+				-1.5
118,762	+				-1.3
118,762	+				+0.4
118,762	+				-0.1
118,763	-				-0.2
118,763	-				+2.0
118,763	-				+0.1
118,763	-				-2.3
118,763	-				-1.7
118,763	-				-1.1
118,763	-				+0.4
118,763	-				-0.2
119,095	+		GFF2072	0.38	-2.2
119,095	+		GFF2072	0.38	-0.5
119,096	-		GFF2072	0.38	+0.9
119,096	-		GFF2072	0.38	-0.6
119,110	+		GFF2072	0.40	-1.2
119,110	+		GFF2072	0.40	-0.5
119,110	+		GFF2072	0.40	-2.0
119,111	-		GFF2072	0.40	-0.0
119,122	+		GFF2072	0.41	-0.8
119,122	+		GFF2072	0.41	-2.1
119,122	+		GFF2072	0.41	+0.2
119,123	-		GFF2072	0.41	+0.6
119,123	-		GFF2072	0.41	-0.1
119,272	+		GFF2072	0.57	-2.2
119,272	+		GFF2072	0.57	-0.6
119,272	+		GFF2072	0.57	-1.4
119,272	+		GFF2072	0.57	-0.3
119,273	-		GFF2072	0.57	+1.8
119,273	-		GFF2072	0.57	-2.9
119,273	-		GFF2072	0.57	-3.0
119,273	-		GFF2072	0.57	-1.7
119,338	+		GFF2072	0.64	-1.0
119,338	+		GFF2072	0.64	+0.7
119,338	+		GFF2072	0.64	-1.6
119,339	-		GFF2072	0.64	+0.7
119,339	-		GFF2072	0.64	-1.2
119,485	+		GFF2072	0.79	+0.1
119,485	+		GFF2072	0.79	-1.5
119,486	-		GFF2072	0.79	-2.7
119,486	-		GFF2072	0.79	-1.0
119,486	-		GFF2072	0.79	-0.8
119,486	-		GFF2072	0.79	-1.3
119,709	+				-0.6
119,780	+		GFF2073	0.13	-0.7
119,780	+		GFF2073	0.13	+0.8
119,781	-		GFF2073	0.13	-1.3
119,810	+		GFF2073	0.18	-0.2
119,810	+		GFF2073	0.18	+0.4
119,810	+		GFF2073	0.18	-0.6
119,810	+		GFF2073	0.18	+0.4
119,811	-		GFF2073	0.18	+1.0
119,811	-		GFF2073	0.18	-1.0
119,811	-		GFF2073	0.18	-0.4
119,811	-		GFF2073	0.18	-1.8
119,811	-		GFF2073	0.18	-0.6
119,811	-		GFF2073	0.18	+1.4
120,128	-		GFF2073	0.74	-0.4
120,388	+		GFF2074	0.13	+0.4
120,409	+		GFF2074	0.15	-0.6
120,410	-		GFF2074	0.15	-3.3
120,410	-		GFF2074	0.15	+0.3