Strain Fitness in Variovorax sp. SCN45 around GFF2041

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
88,719	+		GFF2040	0.39	-0.2
88,719	+		GFF2040	0.39	+0.5
89,318	+		GFF2040	0.87	-0.7
89,319	-		GFF2040	0.87	-2.4
89,319	-		GFF2040	0.87	-0.6
89,319	-		GFF2040	0.87	+0.7
89,319	-		GFF2040	0.87	-1.4
89,319	-		GFF2040	0.87	-0.5
89,396	+				-2.6
89,397	-				-0.2
89,397	-				-1.5
89,397	-				+1.4
89,397	-				-1.8
89,426	+				+0.5
89,426	+				+0.5
89,426	+				-0.7
89,427	-				+0.8
89,479	+				-0.4
89,479	+				+0.7
89,479	+				-0.7
89,479	+				+0.7
89,479	+				+0.5
89,479	+				+0.5
89,479	+				+0.1
89,479	+				-0.6
89,480	-				-2.1
89,480	-				-0.4
89,480	-				+0.4
89,480	-				-2.2
89,480	-				+0.0
89,551	+				+0.7
89,552	-				-0.5
89,552	-				-0.9
89,552	-				+0.1
89,552	-				-1.0
89,552	-				-0.3
89,659	+		GFF2041	0.22	-0.1
89,659	+		GFF2041	0.22	-0.1
89,659	+		GFF2041	0.22	+0.5
89,659	+		GFF2041	0.22	-1.0
89,659	+		GFF2041	0.22	+1.3
89,660	-		GFF2041	0.22	-2.0
89,660	-		GFF2041	0.22	-1.2
89,660	-		GFF2041	0.22	-0.2
89,660	-		GFF2041	0.22	+1.3
89,749	+		GFF2041	0.32	+2.4
89,992	+		GFF2041	0.62	+2.7
89,992	+		GFF2041	0.62	-0.5
89,993	-		GFF2041	0.62	-1.7
89,993	-		GFF2041	0.62	+1.0
90,365	+				-1.6
90,365	+				-0.2
90,365	+				-1.4
90,365	+				-0.6
90,365	+				-0.2
90,365	+				+2.5
90,365	+				-0.5
90,366	-				-0.5
90,366	-				-1.0
90,366	-				+0.6
90,366	-				-1.3
90,366	-				-0.4
90,366	-				-0.6
90,366	-				+1.1
90,447	+				-2.3
90,447	+				+0.4
90,448	-				-0.3
90,448	-				-1.1
90,448	-				-1.4
90,577	+		GFF2042	0.17	-0.2
90,577	+		GFF2042	0.17	+2.2
90,577	+		GFF2042	0.17	-2.0
90,577	+		GFF2042	0.17	+0.3
90,577	+		GFF2042	0.17	+1.8
90,577	+		GFF2042	0.17	-0.9
90,578	-		GFF2042	0.17	+0.6
90,578	-		GFF2042	0.17	+0.7
90,578	-		GFF2042	0.17	-1.8
90,578	-		GFF2042	0.17	-2.8
90,578	-		GFF2042	0.17	+1.7
90,578	-		GFF2042	0.17	-1.7
90,578	-		GFF2042	0.17	-1.7
90,578	-		GFF2042	0.17	-0.7
90,578	-		GFF2042	0.17	+0.8
90,786	+		GFF2042	0.38	-3.1
90,786	+		GFF2042	0.38	-1.2
90,786	+		GFF2042	0.38	+0.1
90,786	+		GFF2042	0.38	-2.6
90,786	+		GFF2042	0.38	+2.0
90,786	+		GFF2042	0.38	+0.8
90,786	+		GFF2042	0.38	+0.9
90,787	-		GFF2042	0.38	+2.6
90,787	-		GFF2042	0.38	+0.4
90,787	-		GFF2042	0.38	-0.5
90,787	-		GFF2042	0.38	+1.7
90,787	-		GFF2042	0.38	-3.4
90,787	-		GFF2042	0.38	+0.6