Strain Fitness in Variovorax sp. SCN45 around GFF2011

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2009 and GFF2010 are separated by 16 nucleotidesGFF2010 and GFF2011 are separated by 1 nucleotidesGFF2011 and GFF2012 are separated by 15 nucleotidesGFF2012 and GFF2013 are separated by 110 nucleotides GFF2009 - Dienelactone hydrolase and related enzymes, at 54,274 to 55,140 GFF2009 GFF2010 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 55,157 to 55,963 GFF2010 GFF2011 - hypothetical protein, at 55,965 to 56,468 GFF2011 GFF2012 - Putative transmembrane protein, at 56,484 to 57,158 GFF2012 GFF2013 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 57,269 to 59,272 GFF2013 Position (kb) 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 54.985 kb on + strand, within GFF2009at 54.985 kb on + strand, within GFF2009at 55.172 kb on + strandat 55.172 kb on + strandat 55.172 kb on + strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.391 kb on + strand, within GFF2010at 55.392 kb on - strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.610 kb on + strand, within GFF2010at 55.611 kb on - strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.650 kb on - strand, within GFF2010at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.559 kb on + strand, within GFF2012at 56.559 kb on + strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 57.156 kb on + strandat 57.156 kb on + strandat 57.156 kb on + strandat 57.274 kb on + strandat 57.282 kb on + strandat 57.282 kb on + strandat 57.283 kb on - strandat 57.283 kb on - strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.292 kb on + strandat 57.363 kb on - strandat 57.363 kb on - strandat 57.437 kb on - strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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54,985 + GFF2009 0.82 -0.4
54,985 + GFF2009 0.82 -0.2
55,172 + +0.8
55,172 + -1.2
55,172 + +1.6
55,173 - +2.2
55,173 - +0.9
55,173 - -0.8
55,391 + GFF2010 0.29 -0.0
55,392 - GFF2010 0.29 -0.4
55,496 + GFF2010 0.42 +0.1
55,496 + GFF2010 0.42 +0.8
55,496 + GFF2010 0.42 +2.6
55,496 + GFF2010 0.42 +0.4
55,496 + GFF2010 0.42 +1.7
55,497 - GFF2010 0.42 -0.6
55,497 - GFF2010 0.42 -0.9
55,497 - GFF2010 0.42 -0.9
55,497 - GFF2010 0.42 -0.9
55,497 - GFF2010 0.42 -1.2
55,497 - GFF2010 0.42 -0.7
55,497 - GFF2010 0.42 +0.1
55,497 - GFF2010 0.42 -0.3
55,497 - GFF2010 0.42 -3.8
55,497 - GFF2010 0.42 +2.4
55,560 - GFF2010 0.50 +0.4
55,560 - GFF2010 0.50 -0.7
55,560 - GFF2010 0.50 -0.9
55,560 - GFF2010 0.50 -0.4
55,610 + GFF2010 0.56 +1.2
55,611 - GFF2010 0.56 +1.7
55,649 + GFF2010 0.61 -2.5
55,649 + GFF2010 0.61 -1.7
55,649 + GFF2010 0.61 -1.0
55,649 + GFF2010 0.61 -1.5
55,650 - GFF2010 0.61 -0.4
56,307 + GFF2011 0.68 -2.1
56,307 + GFF2011 0.68 -0.7
56,307 + GFF2011 0.68 -0.7
56,307 + GFF2011 0.68 -1.2
56,307 + GFF2011 0.68 -0.2
56,308 - GFF2011 0.68 -0.5
56,308 - GFF2011 0.68 -0.6
56,308 - GFF2011 0.68 +0.1
56,308 - GFF2011 0.68 -0.8
56,308 - GFF2011 0.68 +1.7
56,308 - GFF2011 0.68 -0.7
56,559 + GFF2012 0.11 -0.4
56,559 + GFF2012 0.11 -0.5
56,560 - GFF2012 0.11 +2.3
56,560 - GFF2012 0.11 -0.3
56,560 - GFF2012 0.11 +4.0
56,560 - GFF2012 0.11 -1.0
56,593 - GFF2012 0.16 -0.4
56,593 - GFF2012 0.16 -0.4
57,156 + +1.7
57,156 + -0.9
57,156 + +1.4
57,274 + -4.3
57,282 + +2.4
57,282 + -2.7
57,283 - +0.8
57,283 - -0.7
57,286 + -3.0
57,286 + -1.3
57,286 + -3.0
57,286 + +1.0
57,287 - -1.2
57,287 - -1.0
57,287 - -0.1
57,287 - -2.7
57,287 - +0.2
57,287 - -1.3
57,292 + -0.6
57,363 - +0.8
57,363 - -1.7
57,437 - -1.1
57,446 + -2.5
57,446 + +0.2
57,446 + -1.0
57,446 + -0.4
57,446 + -1.8
57,446 + -2.8
57,446 + +0.1
57,447 - +0.2

Or see this region's nucleotide sequence