Strain Fitness in Variovorax sp. SCN45 around GFF200

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
226,713	-		GFF198	0.28	-1.8
226,916	+		GFF198	0.83	-0.3
226,916	+		GFF198	0.83	-3.1
226,916	+		GFF198	0.83	-0.8
226,916	+		GFF198	0.83	-0.2
226,916	+		GFF198	0.83	+0.4
226,917	-		GFF198	0.83	+0.5
226,917	-		GFF198	0.83	-0.2
227,095	+		GFF199	0.21	-1.2
227,095	+		GFF199	0.21	-1.5
227,096	-		GFF199	0.22	-0.8
227,152	+		GFF199	0.33	+0.2
227,152	+		GFF199	0.33	-0.1
227,153	-		GFF199	0.34	-0.6
227,153	-		GFF199	0.34	-1.7
227,228	-		GFF199	0.49	-0.4
227,228	-		GFF199	0.49	-1.2
227,228	-		GFF199	0.49	-1.4
227,228	-		GFF199	0.49	+0.4
227,230	+		GFF199	0.50	-0.3
227,231	-		GFF199	0.50	-0.8
227,231	-		GFF199	0.50	-2.0
227,263	+		GFF199	0.56	-1.6
227,353	+		GFF199	0.75	-0.5
227,353	+		GFF199	0.75	-1.0
227,354	-		GFF199	0.75	-0.2
227,419	+		GFF199	0.89	-0.7
227,429	-				-0.2
227,429	-				-2.1
227,449	+				+2.1
227,449	+				-0.8
227,450	-				-0.4
227,450	-				-0.2
227,502	+				-1.4
227,502	+				-0.1
227,502	+				-2.9
227,502	+				+0.6
227,502	+				-3.5
227,502	+				-1.7
227,502	+				-0.9
227,502	+				+1.3
227,502	+				+0.8
227,502	+				-0.8
227,502	+				-3.1
227,502	+				-2.4
227,502	+				-2.8
227,503	-				-0.0
227,503	-				-1.4
227,503	-				+0.0
227,503	-				-1.0
227,503	-				-2.1
227,586	+				-2.1
228,133	-		GFF200	0.53	-2.5
228,178	-		GFF200	0.56	-1.8
228,387	+		GFF200	0.73	+0.5
228,387	+		GFF200	0.73	-1.8
228,388	-		GFF200	0.73	-1.1
228,388	-		GFF200	0.73	+0.8
228,388	-		GFF200	0.73	+0.3
228,588	+		GFF200	0.89	+0.6
228,588	+		GFF200	0.89	+0.5
228,588	+		GFF200	0.89	+0.3
228,588	+		GFF200	0.89	+0.2
228,588	+		GFF200	0.89	-1.4
228,588	+		GFF200	0.89	-1.5
228,588	+		GFF200	0.89	-2.9
228,588	+		GFF200	0.89	-2.5
228,588	+		GFF200	0.89	+0.2
228,589	-		GFF200	0.89	-1.4
228,589	-		GFF200	0.89	-2.6
228,589	-		GFF200	0.89	-0.9
228,606	+				+0.7
228,607	-				-2.4
228,651	+				+0.5
228,652	-				-2.2
228,746	+				-1.7
228,746	+				+0.4
228,746	+				+1.7
228,767	+				+3.5
228,767	+				-2.3
228,861	-		GFF201	0.11	-1.4
228,861	-		GFF201	0.11	-0.8
229,020	-		GFF201	0.27	+0.5
229,021	+		GFF201	0.27	-0.6
229,021	+		GFF201	0.27	+0.6
229,022	-		GFF201	0.27	-1.3
229,022	-		GFF201	0.27	-2.5
229,169	+		GFF201	0.42	-2.9
229,170	-		GFF201	0.42	-1.7
229,170	-		GFF201	0.42	+1.5
229,230	+		GFF201	0.48	-0.2
229,350	-		GFF201	0.61	-0.9
229,350	-		GFF201	0.61	+0.6
229,535	+		GFF201	0.79	+0.8
229,535	+		GFF201	0.79	-0.5
229,536	-		GFF201	0.79	-1.7
229,643	+				-1.0
229,644	-				+0.9
229,644	-				+0.8
229,726	+				-2.2
229,726	+				+1.0
229,726	+				-0.5
229,726	+				+0.7
229,726	+				-2.1
229,726	+				+0.7
229,726	+				+0.5
229,726	+				+0.1
229,726	+				-0.9
229,726	+				+0.3
229,726	+				-1.0
229,726	+				-2.5
229,726	+				+1.0
229,726	+				+2.1
229,726	+				-0.6
229,726	+				-0.8
229,727	-				-2.7
229,727	-				-1.0
229,727	-				-1.7
229,727	-				-1.8
229,727	-				+0.4
229,727	-				+0.8
229,727	-				+1.3
229,727	-				+1.6
229,727	-				-0.3
229,727	-				-0.6
229,727	-				-1.4
229,727	-				+2.7
229,727	-				-0.3
229,727	-				-1.7
229,727	-				+0.2
229,727	-				+0.1
229,727	-				-1.2
229,727	-				+1.0
229,727	-				-3.2
229,727	-				-1.3
229,727	-				-1.5
229,727	-				-0.2
229,727	-				+0.9