Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1954 and GFF1955 overlap by 4 nucleotides GFF1955 and GFF1956 are separated by 99 nucleotides GFF1956 and GFF1957 overlap by 11 nucleotides
GFF1954 - no description, at 647,168 to 648,433
GFF1954
GFF1955 - hypothetical protein, at 648,430 to 649,458
GFF1955
GFF1956 - Ser/Thr protein phosphatase family protein, at 649,558 to 650,421
GFF1956
GFF1957 - no description, at 650,411 to 650,758
GFF1957
Position (kb) 648
649
650 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 647.488 kb on - strand, within GFF1954 at 647.865 kb on + strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.955 kb on - strand, within GFF1954 at 648.511 kb on + strand at 648.511 kb on + strand at 648.511 kb on + strand at 648.511 kb on + strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.533 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.602 kb on - strand, within GFF1955 at 648.693 kb on + strand, within GFF1955 at 648.694 kb on - strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.895 kb on + strand, within GFF1955 at 648.895 kb on + strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.899 kb on + strand, within GFF1955 at 648.899 kb on + strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 649.009 kb on - strand, within GFF1955 at 649.107 kb on - strand, within GFF1955 at 649.274 kb on + strand, within GFF1955 at 649.309 kb on + strand, within GFF1955 at 649.365 kb on + strand at 649.365 kb on + strand at 649.365 kb on + strand at 649.375 kb on - strand at 649.552 kb on - strand at 649.552 kb on - strand at 649.742 kb on - strand, within GFF1956 at 649.742 kb on - strand, within GFF1956 at 650.210 kb on - strand, within GFF1956 at 650.290 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.411 kb on - strand at 650.411 kb on - strand at 650.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 647,488 - GFF1954 0.25 -4.2 647,865 + GFF1954 0.55 -1.5 647,890 - GFF1954 0.57 -0.3 647,890 - GFF1954 0.57 -2.8 647,955 - GFF1954 0.62 -0.4 648,511 + -0.7 648,511 + +0.4 648,511 + +0.8 648,511 + +1.6 648,512 - -0.7 648,512 - -1.7 648,512 - +1.2 648,512 - -2.5 648,533 + GFF1955 0.10 -1.3 648,562 + GFF1955 0.13 +0.4 648,562 + GFF1955 0.13 -0.8 648,562 + GFF1955 0.13 +3.4 648,562 + GFF1955 0.13 -0.8 648,562 + GFF1955 0.13 +0.2 648,562 + GFF1955 0.13 +0.3 648,602 - GFF1955 0.17 +0.6 648,693 + GFF1955 0.26 -1.8 648,694 - GFF1955 0.26 -2.2 648,724 + GFF1955 0.29 +1.9 648,724 + GFF1955 0.29 +0.0 648,724 + GFF1955 0.29 -1.4 648,724 + GFF1955 0.29 +0.2 648,724 + GFF1955 0.29 +2.7 648,725 - GFF1955 0.29 -0.4 648,725 - GFF1955 0.29 -0.7 648,725 - GFF1955 0.29 +0.9 648,725 - GFF1955 0.29 -0.4 648,726 + GFF1955 0.29 +0.4 648,726 + GFF1955 0.29 -0.4 648,726 + GFF1955 0.29 -0.8 648,727 - GFF1955 0.29 -0.0 648,727 - GFF1955 0.29 +0.6 648,727 - GFF1955 0.29 +0.1 648,727 - GFF1955 0.29 -2.0 648,895 + GFF1955 0.45 -1.1 648,895 + GFF1955 0.45 +0.1 648,896 - GFF1955 0.45 -0.9 648,896 - GFF1955 0.45 +1.2 648,896 - GFF1955 0.45 -1.1 648,896 - GFF1955 0.45 +1.4 648,899 + GFF1955 0.46 +1.5 648,899 + GFF1955 0.46 +0.1 648,900 - GFF1955 0.46 -3.2 648,900 - GFF1955 0.46 -0.5 648,900 - GFF1955 0.46 +0.7 649,009 - GFF1955 0.56 +1.1 649,107 - GFF1955 0.66 -0.4 649,274 + GFF1955 0.82 +1.0 649,309 + GFF1955 0.85 -0.3 649,365 + -2.1 649,365 + -1.5 649,365 + -2.8 649,375 - -2.3 649,552 - +1.8 649,552 - +0.1 649,742 - GFF1956 0.21 +0.4 649,742 - GFF1956 0.21 -0.9 650,210 - GFF1956 0.75 +0.7 650,290 + GFF1956 0.85 +1.4 650,313 + GFF1956 0.87 +0.7 650,313 + GFF1956 0.87 +0.3 650,313 + GFF1956 0.87 -0.5 650,411 - +0.9 650,411 - +2.5 650,411 - -1.3
Or see this region's nucleotide sequence