Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1882 and GFF1883 are separated by 45 nucleotides GFF1883 and GFF1884 are separated by 11 nucleotides GFF1884 and GFF1885 are separated by 0 nucleotides
GFF1882 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-), at 557,000 to 558,055
GFF1882
GFF1883 - putative signal-transduction protein with CBS domains, at 558,101 to 558,538
GFF1883
GFF1884 - Gluconokinase (EC 2.7.1.12), at 558,550 to 559,071
GFF1884
GFF1885 - Gluconate transporter family protein, at 559,072 to 560,454
GFF1885
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.550 kb on - strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.925 kb on - strand, within GFF1882 at 558.874 kb on + strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 559.070 kb on - strand at 559.070 kb on - strand at 559.285 kb on + strand, within GFF1885 at 559.285 kb on + strand, within GFF1885 at 559.286 kb on - strand, within GFF1885 at 559.286 kb on - strand, within GFF1885
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 557,550 - GFF1882 0.52 -0.6 557,690 + GFF1882 0.65 -1.4 557,690 + GFF1882 0.65 -1.8 557,690 + GFF1882 0.65 +2.4 557,690 + GFF1882 0.65 -1.1 557,690 + GFF1882 0.65 -0.6 557,690 + GFF1882 0.65 -0.1 557,691 - GFF1882 0.65 -0.2 557,691 - GFF1882 0.65 -0.4 557,691 - GFF1882 0.65 +0.1 557,691 - GFF1882 0.65 -0.2 557,876 + GFF1882 0.83 +1.4 557,876 + GFF1882 0.83 +0.1 557,876 + GFF1882 0.83 +1.6 557,876 + GFF1882 0.83 -0.5 557,877 - GFF1882 0.83 -0.2 557,877 - GFF1882 0.83 +1.4 557,877 - GFF1882 0.83 +1.3 557,877 - GFF1882 0.83 +2.7 557,877 - GFF1882 0.83 -0.1 557,877 - GFF1882 0.83 -0.8 557,925 - GFF1882 0.88 -0.3 558,874 + GFF1884 0.62 -0.5 558,875 - GFF1884 0.62 +0.1 558,875 - GFF1884 0.62 -0.4 559,070 - -0.1 559,070 - +1.9 559,285 + GFF1885 0.15 +0.1 559,285 + GFF1885 0.15 +0.5 559,286 - GFF1885 0.15 +0.7 559,286 - GFF1885 0.15 -0.0
Or see this region's nucleotide sequence