Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1845 and GFF1846 are separated by 1 nucleotides GFF1846 and GFF1847 are separated by 50 nucleotides GFF1847 and GFF1848 are separated by 359 nucleotides
GFF1845 - Nucleoside ABC transporter, permease protein 1, at 516,192 to 517,343
GFF1845
GFF1846 - Nucleoside ABC transporter, permease protein 2, at 517,345 to 518,265
GFF1846
GFF1847 - Nucleoside ABC transporter, substrate-binding protein, at 518,316 to 519,491
GFF1847
GFF1848 - Proteins incorrectly called adenylate cyclase, at 519,851 to 523,891
GFF1848
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.609 kb on + strand, within GFF1846 at 517.609 kb on + strand, within GFF1846 at 517.610 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.817 kb on - strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.969 kb on + strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.251 kb on + strand at 518.251 kb on + strand at 518.263 kb on + strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.761 kb on - strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.788 kb on - strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.813 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 519.129 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.444 kb on + strand at 519.444 kb on + strand at 519.444 kb on + strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.625 kb on + strand at 519.626 kb on - strand at 519.637 kb on + strand at 519.638 kb on - strand at 519.638 kb on - strand at 519.649 kb on + strand at 519.650 kb on - strand at 519.650 kb on - strand at 519.657 kb on - strand at 519.663 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.687 kb on - strand at 519.752 kb on + strand at 519.752 kb on + strand at 519.753 kb on - strand at 519.757 kb on + strand at 519.757 kb on + strand at 519.758 kb on - strand at 519.758 kb on - strand at 519.971 kb on + strand at 519.971 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.429 kb on - strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 517,354 + -0.2 517,354 + +2.9 517,354 + +1.5 517,354 + -2.5 517,354 + -0.2 517,355 - -0.8 517,355 - -2.1 517,355 - +0.8 517,355 - +2.0 517,609 + GFF1846 0.29 -0.9 517,609 + GFF1846 0.29 -0.5 517,610 - GFF1846 0.29 -1.0 517,706 - GFF1846 0.39 -1.4 517,706 - GFF1846 0.39 -1.0 517,706 - GFF1846 0.39 -1.7 517,706 - GFF1846 0.39 +0.3 517,774 + GFF1846 0.47 -3.5 517,774 + GFF1846 0.47 -1.8 517,774 + GFF1846 0.47 -0.8 517,774 + GFF1846 0.47 +0.4 517,774 + GFF1846 0.47 -1.9 517,774 + GFF1846 0.47 -1.2 517,774 + GFF1846 0.47 -3.6 517,774 + GFF1846 0.47 -1.6 517,774 + GFF1846 0.47 -2.7 517,774 + GFF1846 0.47 -2.2 517,774 + GFF1846 0.47 -2.2 517,774 + GFF1846 0.47 +0.1 517,775 - GFF1846 0.47 -0.8 517,775 - GFF1846 0.47 -1.8 517,775 - GFF1846 0.47 -0.8 517,775 - GFF1846 0.47 -0.8 517,775 - GFF1846 0.47 +0.4 517,775 - GFF1846 0.47 -1.0 517,775 - GFF1846 0.47 +0.1 517,775 - GFF1846 0.47 +1.1 517,775 - GFF1846 0.47 -1.6 517,775 - GFF1846 0.47 -1.8 517,817 - GFF1846 0.51 -0.0 517,954 + GFF1846 0.66 -0.9 517,954 + GFF1846 0.66 -0.4 517,955 - GFF1846 0.66 -0.3 517,955 - GFF1846 0.66 -2.2 517,955 - GFF1846 0.66 -0.2 517,969 + GFF1846 0.68 -0.0 517,970 - GFF1846 0.68 -1.1 517,970 - GFF1846 0.68 -2.1 518,074 + GFF1846 0.79 +0.4 518,074 + GFF1846 0.79 +0.6 518,074 + GFF1846 0.79 -3.2 518,074 + GFF1846 0.79 +0.2 518,074 + GFF1846 0.79 -0.6 518,075 - GFF1846 0.79 +0.4 518,075 - GFF1846 0.79 -2.1 518,075 - GFF1846 0.79 -1.6 518,161 + GFF1846 0.89 +0.7 518,161 + GFF1846 0.89 -0.7 518,161 + GFF1846 0.89 -0.0 518,161 + GFF1846 0.89 -2.5 518,161 + GFF1846 0.89 -0.3 518,161 + GFF1846 0.89 -2.0 518,161 + GFF1846 0.89 +2.1 518,162 - GFF1846 0.89 -0.2 518,162 - GFF1846 0.89 +0.4 518,162 - GFF1846 0.89 -0.9 518,162 - GFF1846 0.89 +1.2 518,162 - GFF1846 0.89 -1.5 518,162 - GFF1846 0.89 -1.3 518,162 - GFF1846 0.89 -2.9 518,162 - GFF1846 0.89 +1.0 518,251 + +0.1 518,251 + -1.7 518,263 + -1.2 518,264 - +1.0 518,264 - -2.3 518,264 - -2.1 518,264 - -1.0 518,264 - -1.8 518,502 + GFF1847 0.16 +1.0 518,502 + GFF1847 0.16 -2.2 518,502 + GFF1847 0.16 -3.0 518,502 + GFF1847 0.16 +0.9 518,502 + GFF1847 0.16 -1.4 518,502 + GFF1847 0.16 -1.2 518,503 - GFF1847 0.16 -0.6 518,503 - GFF1847 0.16 +1.1 518,503 - GFF1847 0.16 +0.2 518,503 - GFF1847 0.16 -1.6 518,503 - GFF1847 0.16 +0.6 518,503 - GFF1847 0.16 -2.1 518,694 + GFF1847 0.32 -0.3 518,694 + GFF1847 0.32 -0.1 518,695 - GFF1847 0.32 +1.4 518,695 - GFF1847 0.32 +1.3 518,695 - GFF1847 0.32 -0.2 518,761 - GFF1847 0.38 +0.6 518,787 + GFF1847 0.40 -0.0 518,787 + GFF1847 0.40 +0.3 518,788 - GFF1847 0.40 +1.4 518,802 + GFF1847 0.41 -0.4 518,802 + GFF1847 0.41 -2.2 518,802 + GFF1847 0.41 -0.4 518,803 - GFF1847 0.41 +0.4 518,803 - GFF1847 0.41 -2.6 518,803 - GFF1847 0.41 -2.5 518,803 - GFF1847 0.41 -0.1 518,803 - GFF1847 0.41 +0.7 518,803 - GFF1847 0.41 +0.5 518,813 + GFF1847 0.42 +0.2 518,814 + GFF1847 0.42 -1.5 518,814 + GFF1847 0.42 -2.3 518,814 + GFF1847 0.42 +0.3 518,814 + GFF1847 0.42 -1.3 518,815 - GFF1847 0.42 -3.1 518,815 - GFF1847 0.42 -0.9 518,815 - GFF1847 0.42 +0.1 518,815 - GFF1847 0.42 -0.4 518,815 - GFF1847 0.42 +0.1 518,815 - GFF1847 0.42 -0.4 518,815 - GFF1847 0.42 -3.1 518,815 - GFF1847 0.42 +0.4 518,815 - GFF1847 0.42 +0.7 518,815 - GFF1847 0.42 -2.6 518,815 - GFF1847 0.42 -2.1 518,815 - GFF1847 0.42 -1.7 518,815 - GFF1847 0.42 -1.0 519,129 + GFF1847 0.69 +0.7 519,177 + GFF1847 0.73 -1.9 519,177 + GFF1847 0.73 -2.5 519,177 + GFF1847 0.73 +0.5 519,178 - GFF1847 0.73 -1.1 519,178 - GFF1847 0.73 +0.5 519,178 - GFF1847 0.73 +1.6 519,180 + GFF1847 0.73 -1.8 519,180 + GFF1847 0.73 -0.6 519,180 + GFF1847 0.73 -1.4 519,180 + GFF1847 0.73 +0.7 519,180 + GFF1847 0.73 +0.5 519,181 - GFF1847 0.74 -0.5 519,181 - GFF1847 0.74 +1.5 519,181 - GFF1847 0.74 -1.4 519,181 - GFF1847 0.74 -2.3 519,181 - GFF1847 0.74 -1.6 519,181 - GFF1847 0.74 -1.5 519,181 - GFF1847 0.74 +0.6 519,181 - GFF1847 0.74 -0.9 519,181 - GFF1847 0.74 -0.8 519,181 - GFF1847 0.74 +2.1 519,181 - GFF1847 0.74 -2.1 519,181 - GFF1847 0.74 +1.2 519,181 - GFF1847 0.74 +2.9 519,444 + -1.5 519,444 + -0.6 519,444 + -0.5 519,445 - +0.2 519,445 - -0.2 519,445 - -0.2 519,445 - +2.1 519,445 - -1.4 519,445 - +2.4 519,445 - -0.1 519,489 + -0.6 519,489 + +1.3 519,489 + -0.4 519,489 + +0.0 519,489 + -0.7 519,489 + -2.5 519,489 + -0.2 519,489 + +0.7 519,489 + -1.9 519,489 + -0.4 519,489 + -0.1 519,489 + +1.0 519,490 - +1.8 519,490 - -0.3 519,490 - +0.9 519,490 - -0.9 519,490 - -0.6 519,625 + +1.4 519,626 - -0.9 519,637 + -1.2 519,638 - -0.8 519,638 - -2.2 519,649 + +1.8 519,650 - -0.1 519,650 - -1.6 519,657 - +0.6 519,663 + -1.1 519,686 + +1.7 519,686 + -1.8 519,686 + +2.5 519,686 + -2.5 519,686 + -0.3 519,687 - -0.2 519,752 + +0.3 519,752 + -0.7 519,753 - -1.5 519,757 + -0.0 519,757 + +0.2 519,758 - +1.9 519,758 - +0.1 519,971 + -2.6 519,971 + +0.1 520,142 + -1.3 520,142 + +0.2 520,142 + +1.4 520,158 - -0.1 520,158 - +0.0 520,158 - +0.1 520,158 - -1.6 520,158 - +0.2 520,158 - -2.2 520,429 - GFF1848 0.14 +0.5 520,442 + GFF1848 0.15 -2.2 520,442 + GFF1848 0.15 +1.3 520,442 + GFF1848 0.15 -1.1 520,442 + GFF1848 0.15 +0.5 520,442 + GFF1848 0.15 +0.1 520,442 + GFF1848 0.15 +2.4 520,443 - GFF1848 0.15 -1.5 520,443 - GFF1848 0.15 +0.8 520,443 - GFF1848 0.15 -0.6 520,443 - GFF1848 0.15 -1.4 520,443 - GFF1848 0.15 +1.6
Or see this region's nucleotide sequence