Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1737 and GFF1738 are separated by 4 nucleotides GFF1738 and GFF1739 are separated by 128 nucleotides
GFF1737 - Carbon starvation protein A, at 396,223 to 398,289
GFF1737
GFF1738 - Uncharacterized proteins YbdD and YjiX, at 398,294 to 398,500
GFF1738
GFF1739 - Glutamate carboxypeptidase (EC 3.4.17.11), at 398,629 to 399,906
GFF1739
Position (kb) 398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 397.390 kb on + strand, within GFF1737 at 397.391 kb on - strand, within GFF1737 at 397.391 kb on - strand, within GFF1737 at 397.391 kb on - strand, within GFF1737 at 397.621 kb on + strand, within GFF1737 at 397.621 kb on + strand, within GFF1737 at 397.668 kb on - strand, within GFF1737 at 397.807 kb on + strand, within GFF1737 at 397.808 kb on - strand, within GFF1737 at 397.940 kb on - strand, within GFF1737 at 398.057 kb on - strand, within GFF1737 at 398.194 kb on + strand at 398.194 kb on + strand at 398.195 kb on - strand at 398.324 kb on + strand, within GFF1738 at 398.379 kb on - strand, within GFF1738 at 398.388 kb on - strand, within GFF1738 at 398.435 kb on + strand, within GFF1738 at 398.498 kb on + strand at 398.499 kb on - strand at 398.499 kb on - strand at 398.559 kb on + strand at 398.559 kb on + strand at 398.559 kb on + strand at 398.560 kb on - strand at 398.560 kb on - strand at 398.560 kb on - strand at 398.785 kb on + strand, within GFF1739 at 398.786 kb on - strand, within GFF1739 at 398.786 kb on - strand, within GFF1739 at 398.786 kb on - strand, within GFF1739 at 399.049 kb on + strand, within GFF1739 at 399.049 kb on + strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.119 kb on - strand, within GFF1739 at 399.119 kb on - strand, within GFF1739 at 399.157 kb on + strand, within GFF1739
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 397,390 + GFF1737 0.56 -1.1 397,391 - GFF1737 0.57 -1.9 397,391 - GFF1737 0.57 -1.5 397,391 - GFF1737 0.57 -0.8 397,621 + GFF1737 0.68 -1.3 397,621 + GFF1737 0.68 -0.3 397,668 - GFF1737 0.70 +2.4 397,807 + GFF1737 0.77 -0.8 397,808 - GFF1737 0.77 +0.2 397,940 - GFF1737 0.83 -1.5 398,057 - GFF1737 0.89 +0.3 398,194 + -0.7 398,194 + -0.2 398,195 - +1.2 398,324 + GFF1738 0.14 -0.2 398,379 - GFF1738 0.41 -0.6 398,388 - GFF1738 0.45 -1.6 398,435 + GFF1738 0.68 +0.3 398,498 + +0.8 398,499 - +0.4 398,499 - -2.0 398,559 + -0.9 398,559 + +0.1 398,559 + -1.4 398,560 - -2.0 398,560 - +2.2 398,560 - +0.4 398,785 + GFF1739 0.12 -0.5 398,786 - GFF1739 0.12 +0.6 398,786 - GFF1739 0.12 -2.3 398,786 - GFF1739 0.12 -2.5 399,049 + GFF1739 0.33 +1.5 399,049 + GFF1739 0.33 +1.4 399,050 - GFF1739 0.33 +4.1 399,050 - GFF1739 0.33 -1.7 399,050 - GFF1739 0.33 +2.4 399,050 - GFF1739 0.33 +0.1 399,119 - GFF1739 0.38 -0.8 399,119 - GFF1739 0.38 +0.5 399,157 + GFF1739 0.41 +0.8
Or see this region's nucleotide sequence