Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1691 and GFF1692 are separated by 7 nucleotides GFF1692 and GFF1693 are separated by 102 nucleotides GFF1693 and GFF1694 are separated by 65 nucleotides
GFF1691 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 335,749 to 337,110
GFF1691
GFF1692 - Two-component system sensor histidine kinase, at 337,118 to 339,070
GFF1692
GFF1693 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 339,173 to 339,922
GFF1693
GFF1694 - Na+/H+-dicarboxylate symporter, at 339,988 to 341,337
GFF1694
Position (kb) 337
338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 336.191 kb on + strand, within GFF1691 at 336.192 kb on - strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.274 kb on + strand at 337.577 kb on + strand, within GFF1692 at 338.451 kb on + strand, within GFF1692 at 338.452 kb on - strand, within GFF1692 at 338.460 kb on + strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.496 kb on + strand, within GFF1692 at 338.497 kb on - strand, within GFF1692 at 338.535 kb on + strand, within GFF1692 at 338.535 kb on + strand, within GFF1692 at 338.536 kb on - strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.667 kb on + strand, within GFF1692 at 338.758 kb on - strand, within GFF1692 at 338.758 kb on - strand, within GFF1692 at 338.931 kb on - strand at 338.931 kb on - strand at 338.931 kb on - strand at 339.122 kb on + strand at 339.133 kb on + strand at 339.134 kb on - strand at 339.151 kb on - strand at 339.247 kb on - strand at 339.363 kb on + strand, within GFF1693 at 339.364 kb on - strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.460 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.817 kb on - strand, within GFF1693 at 339.834 kb on + strand, within GFF1693 at 339.835 kb on - strand, within GFF1693 at 339.947 kb on + strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 336,191 + GFF1691 0.32 +1.0 336,192 - GFF1691 0.33 +0.7 336,194 + GFF1691 0.33 +2.3 336,194 + GFF1691 0.33 +1.6 336,194 + GFF1691 0.33 +0.4 336,194 + GFF1691 0.33 -0.2 336,194 + GFF1691 0.33 -1.1 336,195 - GFF1691 0.33 -1.1 336,195 - GFF1691 0.33 -1.3 336,195 - GFF1691 0.33 +0.4 336,195 - GFF1691 0.33 +1.8 336,195 - GFF1691 0.33 -1.7 337,155 + +1.0 337,155 + +0.1 337,155 + +0.7 337,155 + +0.8 337,156 - +1.8 337,156 - -2.5 337,156 - +0.8 337,156 - -0.2 337,274 + -2.8 337,577 + GFF1692 0.24 -0.8 338,451 + GFF1692 0.68 -1.1 338,452 - GFF1692 0.68 -1.3 338,460 + GFF1692 0.69 -2.5 338,461 - GFF1692 0.69 +0.1 338,461 - GFF1692 0.69 -1.4 338,461 - GFF1692 0.69 +0.1 338,463 + GFF1692 0.69 +0.3 338,463 + GFF1692 0.69 -1.6 338,463 + GFF1692 0.69 -2.2 338,464 - GFF1692 0.69 -0.6 338,464 - GFF1692 0.69 -0.6 338,464 - GFF1692 0.69 -0.4 338,496 + GFF1692 0.71 +0.0 338,497 - GFF1692 0.71 +1.9 338,535 + GFF1692 0.73 -1.4 338,535 + GFF1692 0.73 -2.1 338,536 - GFF1692 0.73 +1.3 338,625 + GFF1692 0.77 +0.8 338,625 + GFF1692 0.77 -2.1 338,625 + GFF1692 0.77 +0.7 338,625 + GFF1692 0.77 -1.2 338,625 + GFF1692 0.77 -0.4 338,626 - GFF1692 0.77 +0.6 338,626 - GFF1692 0.77 -0.6 338,626 - GFF1692 0.77 -0.3 338,626 - GFF1692 0.77 -2.2 338,626 - GFF1692 0.77 -1.8 338,626 - GFF1692 0.77 -1.1 338,667 + GFF1692 0.79 -1.4 338,758 - GFF1692 0.84 -1.2 338,758 - GFF1692 0.84 -0.8 338,931 - -0.2 338,931 - +0.4 338,931 - +1.4 339,122 + +2.4 339,133 + -1.0 339,134 - +0.2 339,151 - +0.0 339,247 - +0.8 339,363 + GFF1693 0.25 -1.7 339,364 - GFF1693 0.25 -2.3 339,459 + GFF1693 0.38 +1.9 339,459 + GFF1693 0.38 -1.1 339,459 + GFF1693 0.38 -2.7 339,459 + GFF1693 0.38 +0.4 339,459 + GFF1693 0.38 +0.3 339,460 - GFF1693 0.38 -0.4 339,724 - GFF1693 0.73 +1.0 339,724 - GFF1693 0.73 -1.7 339,816 + GFF1693 0.86 +1.2 339,816 + GFF1693 0.86 +0.8 339,817 - GFF1693 0.86 +0.7 339,834 + GFF1693 0.88 +1.0 339,835 - GFF1693 0.88 +0.8 339,947 + -3.3 339,948 - +0.6 339,948 - +1.4 339,948 - -0.4 339,948 - -0.3
Or see this region's nucleotide sequence