Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1657 and GFF1658 are separated by 91 nucleotides GFF1658 and GFF1659 overlap by 4 nucleotides
GFF1657 - Nitronate monooxygenase (EC 1.13.12.16), at 298,998 to 300,119
GFF1657
GFF1658 - Transcriptional regulator, LysR family, at 300,211 to 301,086
GFF1658
GFF1659 - Uncharacterized MFS-type transporter, at 301,083 to 302,249
GFF1659
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 300.138 kb on + strand at 300.139 kb on - strand at 300.183 kb on + strand at 300.409 kb on + strand, within GFF1658 at 300.553 kb on + strand, within GFF1658 at 300.814 kb on + strand, within GFF1658 at 301.030 kb on + strand at 301.030 kb on + strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.995 kb on + strand, within GFF1659 at 301.995 kb on + strand, within GFF1659
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 299,788 + GFF1657 0.70 -0.4 299,788 + GFF1657 0.70 -0.2 299,788 + GFF1657 0.70 -1.7 299,788 + GFF1657 0.70 -0.9 299,788 + GFF1657 0.70 +0.8 299,788 + GFF1657 0.70 -0.2 299,788 + GFF1657 0.70 -0.8 299,788 + GFF1657 0.70 -1.2 299,789 - GFF1657 0.70 +0.9 299,789 - GFF1657 0.70 +0.0 299,789 - GFF1657 0.70 +0.8 299,789 - GFF1657 0.70 +1.2 300,138 + -1.6 300,139 - +0.4 300,183 + -1.0 300,409 + GFF1658 0.23 -1.4 300,553 + GFF1658 0.39 -0.3 300,814 + GFF1658 0.69 -0.8 301,030 + -0.2 301,030 + +0.4 301,031 - +1.2 301,031 - +0.3 301,031 - -0.8 301,031 - +1.2 301,031 - -0.9 301,031 - -0.2 301,254 + GFF1659 0.15 +3.1 301,254 + GFF1659 0.15 -1.2 301,254 + GFF1659 0.15 +0.4 301,254 + GFF1659 0.15 -0.6 301,272 + GFF1659 0.16 +2.4 301,272 + GFF1659 0.16 +0.2 301,272 + GFF1659 0.16 -1.8 301,273 - GFF1659 0.16 -1.8 301,273 - GFF1659 0.16 -0.8 301,273 - GFF1659 0.16 +1.0 301,281 + GFF1659 0.17 +1.7 301,281 + GFF1659 0.17 -1.4 301,282 - GFF1659 0.17 +0.8 301,282 - GFF1659 0.17 -1.7 301,753 - GFF1659 0.57 -0.1 301,753 - GFF1659 0.57 -0.2 301,773 + GFF1659 0.59 +0.6 301,773 + GFF1659 0.59 +0.3 301,773 + GFF1659 0.59 +0.8 301,774 - GFF1659 0.59 -0.8 301,774 - GFF1659 0.59 -0.1 301,774 - GFF1659 0.59 -1.6 301,774 - GFF1659 0.59 +0.8 301,774 - GFF1659 0.59 +1.2 301,791 + GFF1659 0.61 +0.2 301,791 + GFF1659 0.61 -1.8 301,791 + GFF1659 0.61 +4.3 301,791 + GFF1659 0.61 -1.5 301,791 + GFF1659 0.61 -1.6 301,792 - GFF1659 0.61 -2.1 301,792 - GFF1659 0.61 -2.9 301,792 - GFF1659 0.61 -0.5 301,792 - GFF1659 0.61 -0.8 301,792 - GFF1659 0.61 -0.8 301,792 - GFF1659 0.61 +0.8 301,995 + GFF1659 0.78 -1.5 301,995 + GFF1659 0.78 -1.1
Or see this region's nucleotide sequence