Strain Fitness in Variovorax sp. SCN45 around GFF1654

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1653 and GFF1654 are separated by 24 nucleotidesGFF1654 and GFF1655 are separated by 267 nucleotidesGFF1655 and GFF1656 overlap by 4 nucleotides GFF1653 - Transcriptional regulator, AcrR family, at 293,001 to 293,738 GFF1653 GFF1654 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 293,763 to 295,457 GFF1654 GFF1655 - no description, at 295,725 to 296,444 GFF1655 GFF1656 - hypothetical protein, at 296,441 to 298,957 GFF1656 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 292.859 kb on + strandat 292.860 kb on - strandat 292.960 kb on + strandat 293.286 kb on + strand, within GFF1653at 293.287 kb on - strand, within GFF1653at 293.334 kb on + strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.547 kb on + strand, within GFF1653at 293.548 kb on - strand, within GFF1653at 293.548 kb on - strand, within GFF1653at 293.771 kb on + strandat 293.771 kb on + strandat 293.863 kb on - strandat 294.186 kb on + strand, within GFF1654at 294.187 kb on - strand, within GFF1654at 295.114 kb on + strand, within GFF1654at 295.114 kb on + strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.496 kb on + strandat 295.532 kb on - strandat 295.532 kb on - strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.616 kb on + strandat 295.617 kb on - strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 296.073 kb on + strand, within GFF1655at 296.145 kb on + strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.257 kb on - strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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292,859 + -0.6
292,860 - -1.3
292,960 + -0.4
293,286 + GFF1653 0.39 +0.8
293,287 - GFF1653 0.39 -2.9
293,334 + GFF1653 0.45 +0.8
293,335 - GFF1653 0.45 +0.1
293,335 - GFF1653 0.45 +0.1
293,335 - GFF1653 0.45 +0.8
293,448 + GFF1653 0.61 -2.2
293,448 + GFF1653 0.61 +0.6
293,448 + GFF1653 0.61 -0.0
293,449 - GFF1653 0.61 -2.9
293,449 - GFF1653 0.61 -0.0
293,449 - GFF1653 0.61 +0.8
293,454 + GFF1653 0.61 -0.5
293,454 + GFF1653 0.61 -2.6
293,454 + GFF1653 0.61 -1.2
293,454 + GFF1653 0.61 +0.8
293,454 + GFF1653 0.61 +0.0
293,454 + GFF1653 0.61 -1.7
293,454 + GFF1653 0.61 +0.1
293,455 - GFF1653 0.62 -0.4
293,455 - GFF1653 0.62 -1.7
293,455 - GFF1653 0.62 -0.9
293,455 - GFF1653 0.62 -0.2
293,455 - GFF1653 0.62 -0.2
293,455 - GFF1653 0.62 -2.5
293,455 - GFF1653 0.62 -2.5
293,547 + GFF1653 0.74 -1.9
293,548 - GFF1653 0.74 +0.4
293,548 - GFF1653 0.74 -1.0
293,771 + +2.4
293,771 + -0.3
293,863 - +0.5
294,186 + GFF1654 0.25 +0.2
294,187 - GFF1654 0.25 +0.0
295,114 + GFF1654 0.80 -0.4
295,114 + GFF1654 0.80 -2.7
295,154 - GFF1654 0.82 -0.5
295,154 - GFF1654 0.82 -0.3
295,154 - GFF1654 0.82 -3.4
295,174 + GFF1654 0.83 -0.0
295,174 + GFF1654 0.83 +0.8
295,174 + GFF1654 0.83 +0.2
295,175 - GFF1654 0.83 +0.1
295,175 - GFF1654 0.83 -3.2
295,175 - GFF1654 0.83 +0.1
295,175 - GFF1654 0.83 -0.6
295,175 - GFF1654 0.83 -2.2
295,496 + +1.6
295,532 - -1.0
295,532 - +1.4
295,564 + +0.3
295,564 + +3.7
295,564 + +1.3
295,564 + +0.1
295,564 + -2.2
295,564 + -1.5
295,564 + -0.7
295,564 + -3.2
295,565 - +0.4
295,565 - +0.1
295,565 - -2.0
295,565 - +0.7
295,565 - -0.8
295,565 - +0.4
295,565 - -0.3
295,565 - -0.4
295,565 - -2.3
295,565 - +0.4
295,565 - +3.1
295,565 - -1.4
295,565 - -3.3
295,565 - +1.1
295,565 - -2.0
295,565 - +0.0
295,616 + -3.9
295,617 - +2.4
295,636 + -1.4
295,636 + +1.4
295,636 + -2.6
295,636 + +0.8
295,637 - +0.0
295,637 - +1.1
295,637 - +2.0
295,637 - -1.8
296,073 + GFF1655 0.48 -0.5
296,145 + GFF1655 0.58 -0.8
296,146 - GFF1655 0.58 +1.4
296,146 - GFF1655 0.58 +0.3
296,203 - GFF1655 0.66 +0.2
296,203 - GFF1655 0.66 -0.7
296,256 + GFF1655 0.74 -1.4
296,256 + GFF1655 0.74 -1.2
296,257 - GFF1655 0.74 +2.5
296,259 + GFF1655 0.74 -3.1
296,259 + GFF1655 0.74 +0.4
296,259 + GFF1655 0.74 -0.3
296,259 + GFF1655 0.74 +1.1
296,259 + GFF1655 0.74 +0.1
296,259 + GFF1655 0.74 -0.4
296,260 - GFF1655 0.74 -1.1
296,260 - GFF1655 0.74 -1.4
296,260 - GFF1655 0.74 -3.0
296,334 + GFF1655 0.85 -0.6
296,334 + GFF1655 0.85 -2.0
296,334 + GFF1655 0.85 -0.6
296,334 + GFF1655 0.85 +1.4
296,335 - GFF1655 0.85 -0.0
296,335 - GFF1655 0.85 +0.6
296,335 - GFF1655 0.85 -0.9
296,335 - GFF1655 0.85 +1.4
296,335 - GFF1655 0.85 -1.4

Or see this region's nucleotide sequence