Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1652 and GFF1653 are separated by 264 nucleotides GFF1653 and GFF1654 are separated by 24 nucleotides
GFF1652 - Uncharacterized MFS-type transporter, at 291,495 to 292,736
GFF1652
GFF1653 - Transcriptional regulator, AcrR family, at 293,001 to 293,738
GFF1653
GFF1654 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 293,763 to 295,457
GFF1654
Position (kb) 293
294 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 292.167 kb on + strand, within GFF1652 at 292.168 kb on - strand, within GFF1652 at 292.168 kb on - strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.207 kb on + strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.208 kb on - strand, within GFF1652 at 292.316 kb on - strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.342 kb on + strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.343 kb on - strand, within GFF1652 at 292.363 kb on + strand, within GFF1652 at 292.364 kb on - strand, within GFF1652 at 292.364 kb on - strand, within GFF1652 at 292.676 kb on + strand at 292.676 kb on + strand at 292.859 kb on + strand at 292.860 kb on - strand at 292.960 kb on + strand at 293.286 kb on + strand, within GFF1653 at 293.287 kb on - strand, within GFF1653 at 293.334 kb on + strand, within GFF1653 at 293.335 kb on - strand, within GFF1653 at 293.335 kb on - strand, within GFF1653 at 293.335 kb on - strand, within GFF1653 at 293.448 kb on + strand, within GFF1653 at 293.448 kb on + strand, within GFF1653 at 293.448 kb on + strand, within GFF1653 at 293.449 kb on - strand, within GFF1653 at 293.449 kb on - strand, within GFF1653 at 293.449 kb on - strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.454 kb on + strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.455 kb on - strand, within GFF1653 at 293.547 kb on + strand, within GFF1653 at 293.548 kb on - strand, within GFF1653 at 293.548 kb on - strand, within GFF1653 at 293.771 kb on + strand at 293.771 kb on + strand at 293.863 kb on - strand at 294.186 kb on + strand, within GFF1654 at 294.187 kb on - strand, within GFF1654
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 292,167 + GFF1652 0.54 -0.5 292,168 - GFF1652 0.54 -0.4 292,168 - GFF1652 0.54 +0.2 292,207 + GFF1652 0.57 -2.1 292,207 + GFF1652 0.57 +0.6 292,207 + GFF1652 0.57 -2.9 292,207 + GFF1652 0.57 +0.7 292,207 + GFF1652 0.57 -1.1 292,207 + GFF1652 0.57 +0.1 292,208 - GFF1652 0.57 -0.9 292,208 - GFF1652 0.57 +1.9 292,208 - GFF1652 0.57 -1.4 292,208 - GFF1652 0.57 -2.0 292,208 - GFF1652 0.57 +0.8 292,208 - GFF1652 0.57 -1.0 292,208 - GFF1652 0.57 +1.4 292,316 - GFF1652 0.66 -1.6 292,342 + GFF1652 0.68 -1.8 292,342 + GFF1652 0.68 -2.0 292,342 + GFF1652 0.68 -2.2 292,342 + GFF1652 0.68 -0.9 292,342 + GFF1652 0.68 +0.1 292,342 + GFF1652 0.68 -2.0 292,342 + GFF1652 0.68 +1.5 292,342 + GFF1652 0.68 +1.1 292,343 - GFF1652 0.68 -2.2 292,343 - GFF1652 0.68 -0.1 292,343 - GFF1652 0.68 -3.9 292,343 - GFF1652 0.68 +2.0 292,343 - GFF1652 0.68 +4.2 292,343 - GFF1652 0.68 +0.4 292,343 - GFF1652 0.68 +2.0 292,343 - GFF1652 0.68 -1.2 292,363 + GFF1652 0.70 -1.8 292,364 - GFF1652 0.70 -0.0 292,364 - GFF1652 0.70 -2.4 292,676 + +1.0 292,676 + +1.4 292,859 + -0.6 292,860 - -1.3 292,960 + -0.4 293,286 + GFF1653 0.39 +0.8 293,287 - GFF1653 0.39 -2.9 293,334 + GFF1653 0.45 +0.8 293,335 - GFF1653 0.45 +0.1 293,335 - GFF1653 0.45 +0.1 293,335 - GFF1653 0.45 +0.8 293,448 + GFF1653 0.61 -2.2 293,448 + GFF1653 0.61 +0.6 293,448 + GFF1653 0.61 -0.0 293,449 - GFF1653 0.61 -2.9 293,449 - GFF1653 0.61 -0.0 293,449 - GFF1653 0.61 +0.8 293,454 + GFF1653 0.61 -0.5 293,454 + GFF1653 0.61 -2.6 293,454 + GFF1653 0.61 -1.2 293,454 + GFF1653 0.61 +0.8 293,454 + GFF1653 0.61 +0.0 293,454 + GFF1653 0.61 -1.7 293,454 + GFF1653 0.61 +0.1 293,455 - GFF1653 0.62 -0.4 293,455 - GFF1653 0.62 -1.7 293,455 - GFF1653 0.62 -0.9 293,455 - GFF1653 0.62 -0.2 293,455 - GFF1653 0.62 -0.2 293,455 - GFF1653 0.62 -2.5 293,455 - GFF1653 0.62 -2.5 293,547 + GFF1653 0.74 -1.9 293,548 - GFF1653 0.74 +0.4 293,548 - GFF1653 0.74 -1.0 293,771 + +2.4 293,771 + -0.3 293,863 - +0.5 294,186 + GFF1654 0.25 +0.2 294,187 - GFF1654 0.25 +0.0
Or see this region's nucleotide sequence