Strain Fitness in Variovorax sp. SCN45 around GFF1613

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1610 and GFF1611 are separated by 5 nucleotidesGFF1611 and GFF1612 are separated by 6 nucleotidesGFF1612 and GFF1613 are separated by 43 nucleotidesGFF1613 and GFF1614 are separated by 2 nucleotidesGFF1614 and GFF1615 overlap by 4 nucleotides GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459 GFF1610 GFF1611 - no description, at 210,465 to 210,812 GFF1611 GFF1612 - no description, at 210,819 to 211,112 GFF1612 GFF1613 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 211,156 to 211,980 GFF1613 GFF1614 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 211,983 to 212,783 GFF1614 GFF1615 - Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1), at 212,780 to 213,649 GFF1615 Position (kb) 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.248 kb on - strand, within GFF1610at 210.458 kb on - strandat 210.487 kb on + strandat 210.488 kb on - strandat 210.494 kb on - strandat 210.494 kb on - strandat 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.542 kb on + strand, within GFF1611at 210.548 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.926 kb on + strand, within GFF1612at 210.926 kb on + strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 211.023 kb on + strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.036 kb on - strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.231 kb on - strandat 211.236 kb on + strandat 211.237 kb on - strandat 211.361 kb on + strand, within GFF1613at 211.640 kb on + strand, within GFF1613at 211.640 kb on + strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.958 kb on + strandat 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614at 212.233 kb on + strand, within GFF1614at 212.234 kb on - strand, within GFF1614at 212.234 kb on - strand, within GFF1614at 212.774 kb on + strandat 212.838 kb on + strandat 212.839 kb on - strandat 212.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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210,247 + GFF1610 0.85 -2.5
210,247 + GFF1610 0.85 -0.2
210,247 + GFF1610 0.85 -1.9
210,247 + GFF1610 0.85 -0.9
210,247 + GFF1610 0.85 +0.4
210,247 + GFF1610 0.85 -2.5
210,248 - GFF1610 0.86 -1.6
210,458 - +0.7
210,487 + -1.5
210,488 - -3.1
210,494 - -1.0
210,494 - -1.5
210,533 + GFF1611 0.20 -1.6
210,533 + GFF1611 0.20 +1.4
210,533 + GFF1611 0.20 -3.4
210,534 - GFF1611 0.20 -1.9
210,534 - GFF1611 0.20 -1.8
210,534 - GFF1611 0.20 -0.8
210,542 + GFF1611 0.22 -0.1
210,548 + GFF1611 0.24 -0.6
210,747 + GFF1611 0.81 -0.8
210,747 + GFF1611 0.81 +0.8
210,747 + GFF1611 0.81 -1.8
210,747 + GFF1611 0.81 +0.8
210,747 + GFF1611 0.81 -1.4
210,747 + GFF1611 0.81 +0.4
210,748 - GFF1611 0.81 -3.2
210,748 - GFF1611 0.81 +0.2
210,748 - GFF1611 0.81 -1.4
210,748 - GFF1611 0.81 -2.6
210,748 - GFF1611 0.81 -2.6
210,748 - GFF1611 0.81 +2.4
210,926 + GFF1612 0.36 -1.7
210,926 + GFF1612 0.36 -1.2
210,927 - GFF1612 0.37 -0.3
210,927 - GFF1612 0.37 +0.8
210,943 + GFF1612 0.42 -0.1
210,943 + GFF1612 0.42 -0.9
210,943 + GFF1612 0.42 +2.4
210,944 - GFF1612 0.43 -2.2
210,944 - GFF1612 0.43 -1.6
211,023 + GFF1612 0.69 +1.4
211,024 - GFF1612 0.70 -1.4
211,024 - GFF1612 0.70 +0.8
211,024 - GFF1612 0.70 +1.0
211,024 - GFF1612 0.70 -1.0
211,024 - GFF1612 0.70 -2.4
211,033 + GFF1612 0.73 -1.8
211,033 + GFF1612 0.73 +0.7
211,034 - GFF1612 0.73 +0.0
211,034 - GFF1612 0.73 -1.2
211,034 - GFF1612 0.73 +0.2
211,034 - GFF1612 0.73 -1.8
211,034 - GFF1612 0.73 +0.4
211,035 + GFF1612 0.73 -0.3
211,035 + GFF1612 0.73 +0.9
211,036 - GFF1612 0.74 -0.1
211,041 + GFF1612 0.76 -1.0
211,041 + GFF1612 0.76 -2.3
211,042 - GFF1612 0.76 +0.0
211,042 - GFF1612 0.76 -1.2
211,231 - -0.7
211,236 + -0.6
211,237 - -0.3
211,361 + GFF1613 0.25 +0.8
211,640 + GFF1613 0.59 +0.6
211,640 + GFF1613 0.59 +0.1
211,641 - GFF1613 0.59 -0.2
211,641 - GFF1613 0.59 +0.4
211,641 - GFF1613 0.59 -2.4
211,641 - GFF1613 0.59 -0.2
211,958 + +0.2
212,069 - GFF1614 0.11 +0.9
212,069 - GFF1614 0.11 -2.4
212,069 - GFF1614 0.11 -1.0
212,069 - GFF1614 0.11 +1.3
212,233 + GFF1614 0.31 +0.1
212,234 - GFF1614 0.31 -1.3
212,234 - GFF1614 0.31 -0.4
212,774 + +0.5
212,838 + -0.3
212,839 - -0.7
212,839 - +0.7

Or see this region's nucleotide sequence