Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1555 and GFF1556 are separated by 99 nucleotides GFF1556 and GFF1557 overlap by 4 nucleotides
GFF1555 - Transcriptional regulator, LysR family, at 153,567 to 154,460
GFF1555
GFF1556 - Tricarboxylate transport protein TctC, at 154,560 to 155,540
GFF1556
GFF1557 - ortholog of Bordetella pertussis (BX470248) BP3300, at 155,537 to 156,514
GFF1557
Position (kb) 154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 153.899 kb on - strand, within GFF1555 at 153.964 kb on + strand, within GFF1555 at 153.964 kb on + strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.980 kb on + strand, within GFF1555 at 153.981 kb on - strand, within GFF1555 at 153.981 kb on - strand, within GFF1555 at 154.158 kb on + strand, within GFF1555 at 154.158 kb on + strand, within GFF1555 at 154.159 kb on - strand, within GFF1555 at 154.189 kb on + strand, within GFF1555 at 154.190 kb on - strand, within GFF1555 at 154.267 kb on - strand, within GFF1555 at 154.272 kb on + strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.396 kb on - strand at 154.563 kb on + strand at 154.563 kb on + strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.650 kb on + strand at 154.650 kb on + strand at 154.834 kb on - strand, within GFF1556 at 154.899 kb on + strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.034 kb on + strand, within GFF1556 at 155.035 kb on - strand, within GFF1556 at 155.035 kb on - strand, within GFF1556 at 155.205 kb on + strand, within GFF1556 at 155.503 kb on - strand at 156.425 kb on + strand at 156.426 kb on - strand at 156.426 kb on - strand at 156.426 kb on - strand at 156.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 153,899 - GFF1555 0.37 +0.3 153,964 + GFF1555 0.44 -2.6 153,964 + GFF1555 0.44 -0.5 153,965 - GFF1555 0.45 -1.4 153,965 - GFF1555 0.45 -1.6 153,965 - GFF1555 0.45 +0.6 153,965 - GFF1555 0.45 -0.7 153,980 + GFF1555 0.46 +0.0 153,981 - GFF1555 0.46 -1.6 153,981 - GFF1555 0.46 -2.4 154,158 + GFF1555 0.66 -1.2 154,158 + GFF1555 0.66 +1.4 154,159 - GFF1555 0.66 +2.0 154,189 + GFF1555 0.70 -3.9 154,190 - GFF1555 0.70 -1.1 154,267 - GFF1555 0.78 -2.0 154,272 + GFF1555 0.79 +1.4 154,273 - GFF1555 0.79 +0.0 154,273 - GFF1555 0.79 -1.8 154,273 - GFF1555 0.79 +0.1 154,396 - -2.4 154,563 + -0.1 154,563 + -0.7 154,564 - +0.8 154,564 - +1.6 154,564 - +1.7 154,564 - +2.3 154,650 + +0.1 154,650 + +1.7 154,834 - GFF1556 0.28 -1.9 154,899 + GFF1556 0.35 +3.2 155,029 - GFF1556 0.48 +1.4 155,029 - GFF1556 0.48 -0.6 155,029 - GFF1556 0.48 -0.2 155,029 - GFF1556 0.48 -3.5 155,034 + GFF1556 0.48 -1.3 155,035 - GFF1556 0.48 -1.3 155,035 - GFF1556 0.48 +0.7 155,205 + GFF1556 0.66 -0.8 155,503 - +0.7 156,425 + -1.6 156,426 - -2.8 156,426 - +1.3 156,426 - -3.1 156,426 - +1.4
Or see this region's nucleotide sequence