Strain Fitness in Variovorax sp. SCN45 around GFF1515

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
109,117	+		GFF1514	0.59	+0.8
109,117	+		GFF1514	0.59	-0.2
109,117	+		GFF1514	0.59	+0.6
109,117	+		GFF1514	0.59	-2.4
109,117	+		GFF1514	0.59	-1.4
109,117	+		GFF1514	0.59	-1.6
109,117	+		GFF1514	0.59	-0.4
109,117	+		GFF1514	0.59	-0.3
109,117	+		GFF1514	0.59	+1.6
109,117	+		GFF1514	0.59	-2.0
109,117	+		GFF1514	0.59	-0.1
109,118	-		GFF1514	0.59	-1.1
109,118	-		GFF1514	0.59	+2.9
109,118	-		GFF1514	0.59	-1.7
109,118	-		GFF1514	0.59	-0.6
109,118	-		GFF1514	0.59	-1.3
109,135	+		GFF1514	0.60	-0.5
109,136	-		GFF1514	0.60	-0.2
109,211	-		GFF1514	0.63	+0.9
109,211	-		GFF1514	0.63	+0.9
109,211	-		GFF1514	0.63	+0.2
109,211	-		GFF1514	0.63	+0.9
109,234	+		GFF1514	0.64	+0.7
109,235	-		GFF1514	0.64	+2.4
109,249	+		GFF1514	0.65	+1.8
109,249	+		GFF1514	0.65	-2.6
109,249	+		GFF1514	0.65	+0.2
109,249	+		GFF1514	0.65	+3.1
109,250	-		GFF1514	0.65	+0.8
109,309	+		GFF1514	0.67	+0.7
109,309	+		GFF1514	0.67	+0.0
109,309	+		GFF1514	0.67	-1.1
109,309	+		GFF1514	0.67	-2.7
109,309	+		GFF1514	0.67	+0.3
109,309	+		GFF1514	0.67	-0.7
109,309	+		GFF1514	0.67	-0.6
109,309	+		GFF1514	0.67	-1.9
109,309	+		GFF1514	0.67	+0.2
109,309	+		GFF1514	0.67	-0.8
109,309	+		GFF1514	0.67	-3.4
109,309	+		GFF1514	0.67	+0.4
109,310	-		GFF1514	0.68	-0.5
109,310	-		GFF1514	0.68	-0.5
109,310	-		GFF1514	0.68	+0.6
109,310	-		GFF1514	0.68	-0.2
109,310	-		GFF1514	0.68	-0.3
109,310	-		GFF1514	0.68	-0.2
109,310	-		GFF1514	0.68	-0.3
109,310	-		GFF1514	0.68	+0.0
109,310	-		GFF1514	0.68	-1.0
109,534	+		GFF1514	0.78	+0.9
109,534	+		GFF1514	0.78	+0.8
109,535	-		GFF1514	0.78	-2.0
109,535	-		GFF1514	0.78	-0.0
109,555	+		GFF1514	0.79	+0.4
109,555	+		GFF1514	0.79	-1.3
109,556	-		GFF1514	0.79	-0.6
109,556	-		GFF1514	0.79	+2.7
109,556	-		GFF1514	0.79	-1.0
109,953	+				-1.5
109,953	+				-1.0
109,975	+				-2.3
109,976	-				+1.6
109,976	-				-1.2
109,981	+				+0.8
110,174	+				-0.8
110,487	-		GFF1515	0.26	-2.7
110,508	+		GFF1515	0.28	-1.1
110,509	-		GFF1515	0.28	-1.3
110,509	-		GFF1515	0.28	+0.0
110,509	-		GFF1515	0.28	+0.4
110,652	+		GFF1515	0.38	-1.2
110,652	+		GFF1515	0.38	+0.1
110,796	+		GFF1515	0.48	-5.2
110,796	+		GFF1515	0.48	-0.6
110,796	+		GFF1515	0.48	+1.3
110,797	-		GFF1515	0.48	-2.0
110,797	-		GFF1515	0.48	-1.0
110,797	-		GFF1515	0.48	-2.3
110,797	-		GFF1515	0.48	-1.6
110,797	-		GFF1515	0.48	-3.9
111,081	+		GFF1515	0.68	-1.0
111,081	+		GFF1515	0.68	-0.8
111,225	+		GFF1515	0.78	-1.2
111,226	-		GFF1515	0.78	-0.6
111,226	-		GFF1515	0.78	+0.4
111,226	-		GFF1515	0.78	+1.2
111,226	-		GFF1515	0.78	+0.4
111,226	-		GFF1515	0.78	-0.4
111,758	-		GFF1516	0.17	-0.2
112,030	+		GFF1516	0.38	-2.0
112,030	+		GFF1516	0.38	-0.0
112,031	-		GFF1516	0.38	+0.6
112,031	-		GFF1516	0.38	-0.6
112,329	+		GFF1516	0.61	+0.9
112,329	+		GFF1516	0.61	-0.1
112,329	+		GFF1516	0.61	-1.3
112,329	+		GFF1516	0.61	-1.3
112,329	+		GFF1516	0.61	-1.2
112,329	+		GFF1516	0.61	+2.9
112,330	-		GFF1516	0.61	-0.7
112,351	-		GFF1516	0.63	-0.6
112,540	+		GFF1516	0.78	-0.6
112,540	+		GFF1516	0.78	+1.4
112,540	+		GFF1516	0.78	-2.5