Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1488 and GFF1489 overlap by 4 nucleotides GFF1489 and GFF1490 are separated by 3 nucleotides GFF1490 and GFF1491 are separated by 35 nucleotides
GFF1488 - Tetrapartite efflux system, membrane fusion component FusE-like, at 80,915 to 81,913
GFF1488
GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373
GFF1489
GFF1490 - Transcriptional regulator, LysR family, at 83,377 to 84,273
GFF1490
GFF1491 - Gluconolactonase, at 84,309 to 85,241
GFF1491
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.510 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.834 kb on + strand at 81.835 kb on - strand at 81.835 kb on - strand at 81.905 kb on - strand at 82.105 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.301 kb on - strand, within GFF1489 at 82.324 kb on + strand, within GFF1489 at 82.348 kb on + strand, within GFF1489 at 82.471 kb on + strand, within GFF1489 at 82.472 kb on - strand, within GFF1489 at 82.951 kb on + strand, within GFF1489 at 82.952 kb on - strand, within GFF1489 at 83.191 kb on + strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.371 kb on + strand at 83.887 kb on + strand, within GFF1490 at 83.950 kb on + strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.008 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.187 kb on + strand at 84.187 kb on + strand at 84.188 kb on - strand at 84.188 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 81,510 - GFF1488 0.60 -2.2 81,561 - GFF1488 0.65 +0.2 81,561 - GFF1488 0.65 +0.1 81,834 + -2.2 81,835 - -0.5 81,835 - -3.6 81,905 - -1.7 82,105 + GFF1489 0.13 -1.6 82,300 + GFF1489 0.27 +1.6 82,300 + GFF1489 0.27 -1.2 82,300 + GFF1489 0.27 -3.2 82,301 - GFF1489 0.27 +1.1 82,324 + GFF1489 0.28 -1.8 82,348 + GFF1489 0.30 +0.3 82,471 + GFF1489 0.38 +0.0 82,472 - GFF1489 0.38 -0.1 82,951 + GFF1489 0.71 +0.8 82,952 - GFF1489 0.71 -0.1 83,191 + GFF1489 0.88 -0.8 83,192 - GFF1489 0.88 +0.8 83,192 - GFF1489 0.88 +0.8 83,192 - GFF1489 0.88 +0.7 83,192 - GFF1489 0.88 +0.2 83,192 - GFF1489 0.88 +0.2 83,371 + +0.4 83,887 + GFF1490 0.57 -0.2 83,950 + GFF1490 0.64 -2.4 83,951 - GFF1490 0.64 +0.3 83,951 - GFF1490 0.64 +1.2 83,951 - GFF1490 0.64 +0.6 84,007 + GFF1490 0.70 -0.2 84,007 + GFF1490 0.70 -0.2 84,007 + GFF1490 0.70 +0.1 84,008 - GFF1490 0.70 -1.5 84,102 - GFF1490 0.81 +0.4 84,102 - GFF1490 0.81 -0.8 84,187 + -0.6 84,187 + -1.7 84,188 - +1.8 84,188 - +0.5 84,310 + +1.4 84,310 + +0.6 84,311 - -2.6
Or see this region's nucleotide sequence