Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1472 and GFF1473 are separated by 42 nucleotides GFF1473 and GFF1474 are separated by 114 nucleotides
GFF1472 - Tricarboxylate transport protein TctC, at 63,640 to 64,608
GFF1472
GFF1473 - Amidase family protein BBta_1912, at 64,651 to 66,060
GFF1473
GFF1474 - Transcriptional regulator, LysR family, at 66,175 to 67,074
GFF1474
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.687 kb on - strand at 64.072 kb on - strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.292 kb on + strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.615 kb on + strand at 64.616 kb on - strand at 64.652 kb on + strand at 64.652 kb on + strand at 64.653 kb on - strand at 64.653 kb on - strand at 64.950 kb on + strand, within GFF1473 at 65.441 kb on + strand, within GFF1473 at 65.442 kb on - strand, within GFF1473 at 65.442 kb on - strand, within GFF1473 at 65.447 kb on + strand, within GFF1473 at 65.447 kb on + strand, within GFF1473 at 65.448 kb on - strand, within GFF1473 at 65.448 kb on - strand, within GFF1473 at 65.805 kb on - strand, within GFF1473 at 65.815 kb on + strand, within GFF1473 at 65.815 kb on + strand, within GFF1473 at 65.816 kb on - strand, within GFF1473 at 65.938 kb on + strand at 66.049 kb on + strand at 66.163 kb on + strand at 66.163 kb on + strand at 66.175 kb on - strand at 66.206 kb on - strand at 66.490 kb on + strand, within GFF1474 at 66.490 kb on + strand, within GFF1474 at 66.490 kb on + strand, within GFF1474 at 66.553 kb on + strand, within GFF1474
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 63,687 - -0.5 64,072 - GFF1472 0.45 -0.8 64,211 + GFF1472 0.59 -1.7 64,211 + GFF1472 0.59 -2.5 64,212 - GFF1472 0.59 -3.6 64,212 - GFF1472 0.59 -0.6 64,292 + GFF1472 0.67 -0.0 64,293 - GFF1472 0.67 -0.2 64,293 - GFF1472 0.67 -0.3 64,307 + GFF1472 0.69 +0.4 64,307 + GFF1472 0.69 +0.0 64,307 + GFF1472 0.69 +0.5 64,308 - GFF1472 0.69 -3.4 64,308 - GFF1472 0.69 +0.2 64,308 - GFF1472 0.69 -2.1 64,308 - GFF1472 0.69 -2.4 64,615 + +0.5 64,616 - -0.5 64,652 + -2.4 64,652 + -1.0 64,653 - +0.8 64,653 - +0.4 64,950 + GFF1473 0.21 -0.2 65,441 + GFF1473 0.56 -0.9 65,442 - GFF1473 0.56 +0.0 65,442 - GFF1473 0.56 -0.2 65,447 + GFF1473 0.56 +0.6 65,447 + GFF1473 0.56 +0.5 65,448 - GFF1473 0.57 +0.4 65,448 - GFF1473 0.57 +1.1 65,805 - GFF1473 0.82 +2.1 65,815 + GFF1473 0.83 -0.6 65,815 + GFF1473 0.83 +0.2 65,816 - GFF1473 0.83 +0.9 65,938 + +0.9 66,049 + -2.3 66,163 + -2.3 66,163 + -0.6 66,175 - -0.5 66,206 - -2.7 66,490 + GFF1474 0.35 -2.1 66,490 + GFF1474 0.35 +0.0 66,490 + GFF1474 0.35 -0.5 66,553 + GFF1474 0.42 +0.4
Or see this region's nucleotide sequence