Strain Fitness in Variovorax sp. SCN45 around GFF1425

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
15,292	+				+1.2
15,292	+				-2.2
15,293	-				+1.6
15,764	+		GFF1424	0.50	-0.3
15,764	+		GFF1424	0.50	-1.0
15,765	-		GFF1424	0.51	-1.0
15,765	-		GFF1424	0.51	-0.2
15,765	-		GFF1424	0.51	-0.6
15,818	+		GFF1424	0.56	+0.7
15,818	+		GFF1424	0.56	-0.8
15,818	+		GFF1424	0.56	-1.1
15,818	+		GFF1424	0.56	+0.5
15,968	+		GFF1424	0.72	+0.3
15,968	+		GFF1424	0.72	+0.8
15,969	-		GFF1424	0.72	-0.9
15,969	-		GFF1424	0.72	+0.6
16,125	-		GFF1424	0.89	-1.9
16,125	-		GFF1424	0.89	+0.9
16,235	+				-0.3
16,236	-				-0.4
16,236	-				-0.5
16,988	+				-1.3
17,351	+		GFF1426	0.51	-0.6
17,352	-		GFF1426	0.51	-1.1
17,352	-		GFF1426	0.51	+0.9
17,352	-		GFF1426	0.51	-1.3
17,352	-		GFF1426	0.51	+2.8
17,612	+		GFF1426	0.87	+1.1
17,612	+		GFF1426	0.87	-1.7
17,612	+		GFF1426	0.87	-1.0
17,613	-		GFF1426	0.87	-0.3
17,690	+				-1.9
17,690	+				-2.0
17,822	-		GFF1427	0.10	-0.0
17,859	+		GFF1427	0.14	-2.7
17,859	+		GFF1427	0.14	-1.7
17,860	-		GFF1427	0.14	+2.4
17,860	-		GFF1427	0.14	+1.9
17,860	-		GFF1427	0.14	+0.0
17,872	-		GFF1427	0.15	-3.1
17,967	+		GFF1427	0.24	-0.9
17,968	-		GFF1427	0.24	+1.6