Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1393 and GFF1394 are separated by 15 nucleotides GFF1394 and GFF1395 are separated by 3 nucleotides GFF1395 and GFF1396 are separated by 175 nucleotides
GFF1393 - hypothetical protein, at 741,623 to 742,501
GFF1393
GFF1394 - no description, at 742,517 to 743,341
GFF1394
GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872
GFF1395
GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085
GFF1396
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 741.704 kb on + strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.912 kb on - strand, within GFF1393 at 741.958 kb on + strand, within GFF1393 at 741.959 kb on - strand, within GFF1393 at 742.155 kb on + strand, within GFF1393 at 742.156 kb on - strand, within GFF1393 at 742.513 kb on + strand at 742.513 kb on + strand at 742.513 kb on + strand at 742.514 kb on - strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.524 kb on - strand at 742.524 kb on - strand at 742.536 kb on - strand at 742.630 kb on + strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.699 kb on + strand, within GFF1394 at 742.700 kb on - strand, within GFF1394 at 742.973 kb on + strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 743.076 kb on + strand, within GFF1394 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.800 kb on - strand, within GFF1395 at 743.830 kb on - strand at 743.830 kb on - strand at 743.891 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.934 kb on + strand at 743.935 kb on - strand at 744.133 kb on - strand at 744.274 kb on - strand, within GFF1396 at 744.274 kb on - strand, within GFF1396
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 741,704 + -0.1 741,705 - -0.2 741,705 - +1.6 741,705 - -0.2 741,857 + GFF1393 0.27 -0.1 741,857 + GFF1393 0.27 +1.5 741,857 + GFF1393 0.27 -1.2 741,858 - GFF1393 0.27 +1.3 741,858 - GFF1393 0.27 -0.8 741,869 + GFF1393 0.28 +1.0 741,869 + GFF1393 0.28 -0.6 741,870 - GFF1393 0.28 -0.5 741,870 - GFF1393 0.28 +0.1 741,911 + GFF1393 0.33 +0.8 741,911 + GFF1393 0.33 -1.5 741,911 + GFF1393 0.33 -2.8 741,912 - GFF1393 0.33 -1.4 741,958 + GFF1393 0.38 -0.8 741,959 - GFF1393 0.38 -0.4 742,155 + GFF1393 0.61 -2.3 742,156 - GFF1393 0.61 -0.4 742,513 + +1.7 742,513 + +1.4 742,513 + +0.3 742,514 - -1.9 742,523 + +2.9 742,523 + +0.6 742,523 + -2.9 742,524 - -0.8 742,524 - -1.5 742,536 - +0.2 742,630 + GFF1394 0.14 -1.4 742,637 - GFF1394 0.15 -0.8 742,637 - GFF1394 0.15 +0.1 742,699 + GFF1394 0.22 -0.8 742,700 - GFF1394 0.22 +0.7 742,973 + GFF1394 0.55 -0.2 742,974 - GFF1394 0.55 -0.8 742,974 - GFF1394 0.55 -1.6 743,076 + GFF1394 0.68 -0.7 743,457 + GFF1395 0.21 -1.4 743,457 + GFF1395 0.21 +0.1 743,457 + GFF1395 0.21 -1.0 743,457 + GFF1395 0.21 +1.2 743,458 - GFF1395 0.21 +0.7 743,458 - GFF1395 0.21 +0.4 743,458 - GFF1395 0.21 -0.5 743,458 - GFF1395 0.21 -0.4 743,458 - GFF1395 0.21 -1.0 743,577 + GFF1395 0.44 -0.3 743,577 + GFF1395 0.44 +0.3 743,578 - GFF1395 0.44 -0.8 743,578 - GFF1395 0.44 +0.3 743,578 - GFF1395 0.44 +0.8 743,578 - GFF1395 0.44 +0.9 743,578 - GFF1395 0.44 -0.7 743,784 + GFF1395 0.83 +0.2 743,784 + GFF1395 0.83 +1.7 743,785 - GFF1395 0.83 -0.6 743,785 - GFF1395 0.83 -2.3 743,785 - GFF1395 0.83 +1.8 743,785 - GFF1395 0.83 +0.2 743,785 - GFF1395 0.83 +0.8 743,785 - GFF1395 0.83 -1.0 743,800 - GFF1395 0.86 -0.1 743,830 - -0.5 743,830 - +0.1 743,891 + -0.3 743,925 + -3.0 743,925 + -1.8 743,925 + -2.1 743,934 + +2.3 743,935 - +1.4 744,133 - -0.9 744,274 - GFF1396 0.22 -0.1 744,274 - GFF1396 0.22 -1.0
Or see this region's nucleotide sequence