Strain Fitness in Variovorax sp. SCN45 around GFF139

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF137 and GFF138 are separated by 135 nucleotidesGFF138 and GFF139 are separated by 16 nucleotidesGFF139 and GFF140 are separated by 121 nucleotides GFF137 - Transcriptional regulator PA4174, LysR family, at 165,515 to 166,492 GFF137 GFF138 - RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein, at 166,628 to 167,032 GFF138 GFF139 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 167,049 to 168,284 GFF139 GFF140 - Putative transport protein, at 168,406 to 169,347 GFF140 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.296 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.673 kb on + strand, within GFF138at 166.673 kb on + strand, within GFF138at 166.674 kb on - strand, within GFF138at 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.090 kb on - strandat 167.149 kb on + strandat 167.150 kb on - strandat 167.150 kb on - strandat 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.180 kb on - strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.264 kb on - strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.399 kb on - strand, within GFF139at 167.425 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.599 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.869 kb on + strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.870 kb on - strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.899 kb on + strand, within GFF139at 167.900 kb on - strand, within GFF139at 167.920 kb on + strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.921 kb on - strand, within GFF139at 167.968 kb on + strand, within GFF139at 167.969 kb on - strand, within GFF139at 167.969 kb on - strand, within GFF139at 168.086 kb on - strand, within GFF139at 168.362 kb on + strandat 168.407 kb on + strandat 168.407 kb on + strandat 168.587 kb on - strand, within GFF140at 168.587 kb on - strand, within GFF140at 168.587 kb on - strand, within GFF140at 168.606 kb on - strand, within GFF140at 168.606 kb on - strand, within GFF140at 168.664 kb on + strand, within GFF140at 168.665 kb on - strand, within GFF140at 168.815 kb on + strand, within GFF140at 168.815 kb on + strand, within GFF140at 168.816 kb on - strand, within GFF140at 168.878 kb on + strand, within GFF140at 168.878 kb on + strand, within GFF140at 168.879 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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166,296 + GFF137 0.80 -1.2
166,296 + GFF137 0.80 +1.5
166,297 - GFF137 0.80 -1.6
166,297 - GFF137 0.80 -0.6
166,299 + GFF137 0.80 -0.3
166,299 + GFF137 0.80 +0.2
166,300 - GFF137 0.80 -1.2
166,300 - GFF137 0.80 -2.7
166,582 + +0.8
166,582 + +2.9
166,582 + +2.8
166,582 + -1.7
166,583 - -1.3
166,583 - -0.6
166,583 - -3.3
166,583 - -1.6
166,673 + GFF138 0.11 -2.4
166,673 + GFF138 0.11 -0.1
166,674 - GFF138 0.11 +1.4
167,083 + -2.2
167,083 + +0.8
167,083 + +0.8
167,083 + -1.2
167,083 + +3.1
167,084 - +0.4
167,084 - +0.5
167,084 - +0.2
167,084 - +1.2
167,084 - -0.5
167,084 - +1.9
167,084 - +1.8
167,089 + +1.4
167,089 + -2.8
167,089 + +0.2
167,089 + +3.1
167,089 + +0.5
167,090 - -2.3
167,149 + +0.2
167,150 - +0.9
167,150 - -0.5
167,179 + GFF139 0.11 +1.8
167,179 + GFF139 0.11 -2.6
167,179 + GFF139 0.11 -1.7
167,179 + GFF139 0.11 -2.3
167,180 - GFF139 0.11 +0.8
167,197 + GFF139 0.12 -0.6
167,197 + GFF139 0.12 +2.0
167,264 - GFF139 0.17 -2.0
167,398 + GFF139 0.28 -0.9
167,398 + GFF139 0.28 +1.4
167,398 + GFF139 0.28 -3.6
167,398 + GFF139 0.28 -0.3
167,399 - GFF139 0.28 -0.2
167,425 + GFF139 0.30 +1.0
167,599 + GFF139 0.44 -0.1
167,599 + GFF139 0.44 -3.5
167,599 + GFF139 0.44 +0.8
167,869 + GFF139 0.66 -1.1
167,869 + GFF139 0.66 -2.6
167,869 + GFF139 0.66 +1.2
167,870 - GFF139 0.66 -1.0
167,870 - GFF139 0.66 -1.0
167,870 - GFF139 0.66 -3.5
167,870 - GFF139 0.66 +3.1
167,899 + GFF139 0.69 +0.2
167,899 + GFF139 0.69 -0.9
167,899 + GFF139 0.69 -2.0
167,899 + GFF139 0.69 -1.1
167,900 - GFF139 0.69 -1.0
167,920 + GFF139 0.70 -0.9
167,921 - GFF139 0.71 -1.2
167,921 - GFF139 0.71 +0.1
167,921 - GFF139 0.71 -1.4
167,968 + GFF139 0.74 -0.8
167,969 - GFF139 0.74 +1.8
167,969 - GFF139 0.74 +1.6
168,086 - GFF139 0.84 -0.8
168,362 + +1.5
168,407 + -0.5
168,407 + -1.6
168,587 - GFF140 0.19 -2.0
168,587 - GFF140 0.19 -0.2
168,587 - GFF140 0.19 +0.9
168,606 - GFF140 0.21 -1.5
168,606 - GFF140 0.21 -1.7
168,664 + GFF140 0.27 -0.8
168,665 - GFF140 0.27 +2.4
168,815 + GFF140 0.43 +0.6
168,815 + GFF140 0.43 +0.2
168,816 - GFF140 0.44 +0.5
168,878 + GFF140 0.50 -0.8
168,878 + GFF140 0.50 -0.2
168,879 - GFF140 0.50 -0.3
169,008 - GFF140 0.64 -0.1
169,008 - GFF140 0.64 -1.8
169,008 - GFF140 0.64 +0.5
169,125 - GFF140 0.76 -1.9
169,125 - GFF140 0.76 -1.0
169,125 - GFF140 0.76 +0.4

Or see this region's nucleotide sequence